NAU3823, NAU3823 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3823
Genbank IDCO121300
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(at)7
PCR ConditionAnnealing temperature: 57
Primer 1NAU3823_F: AGAAAAGCGCTGCTGATAGT
Primer 2NAU3823_R: GCTGACAAAGTCTATCCTAAAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO121300
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D05chromosomeD05:3224850..3225050 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A05chromosomeA05:3583026..3583234 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018219.1chromosomeCM018219.1:3011269..3011473 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018206.1chromosomeCM018206.1:3542651..3542855 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_05chromosomeD5_05:2832539..2832741 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_05chromosomeKI_05:2594780..2594977 +Gossypioides kirkii genome ISU_v3
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3467792..3468006 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_05chromosomeD10_05:57666128..57666326 -Gossypium turneri (D10) genome NSF_v1_a2
CM016626.1chromosomeCM016626.1:4955216..4955418 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr9chromosomeDt_chr9:66326788..66326988 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr9chromosomeAt_chr9:50754656..50754884 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold1240_A05supercontigscaffold1240_A05:59401..59609 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D05chromosomeD05:3064001..3064201 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D05chromosomeGhir_D05:3199535..3199735 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A05chromosomeGhir_A05:3583278..3583491 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D05chromosomeD05:2999711..2999911 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:3458608..3458816 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D05chromosomeD05:3109737..3109937 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:3557394..3557602 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D05chromosomeD05:2970039..2970239 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A05chromosomeA05:3961932..3962140 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold3667supercontigscaffold3667:33108..33312 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold10000supercontigscaffold10000:477891..478095 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D05chromosomeGbar_D05:3100430..3100634 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A05chromosomeGbar_A05:3232114..3232318 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D05chromosomeD05:3251478..3251682 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A05chromosomeA05:3713288..3713492 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017627.1chromosomeCM017627.1:3081383..3081581 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017614.1chromosomeCM017614.1:3544946..3545148 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017653.1chromosomeCM017653.1:3247069..3247269 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017640.1chromosomeCM017640.1:3609777..3609979 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017705.1chromosomeCM017705.1:3072596..3072802 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017692.1chromosomeCM017692.1:3510230..3510432 +Gossypium darwinii (AD5) genome HGS_v1.1
D05chromosomeD05:3134204..3134404 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A05chromosomeA05:3666746..3666954 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:3769992..3770202 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:2837984..2838186 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_05chromosomeB_05:82715382..82715598 -Gossypium anomalum (B1) genome NSF_v1
Chr09chromosomeChr09:2970415..2970613 +Gossypium thurberi (D1-5) genome CRI_v1
chr09chromosomechr09:2800845..2801049 +Gossypium armourianum (D2-1) genome ISU_v1
Chr09chromosomeChr09:3044565..3044783 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr09chromosomeChr09:2823754..2823960 +Gossypium aridum (D4) genome ISU_v1
E05chromosomeE05:3837682..3837885 +Gossypium stocksii (E1) genome NSF_v1
Chr13chromosomeChr13:195150374..195150590 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A14.4NAU3823View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A47NAU3823View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch05_At.05N/A7.9NAU3823View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A33.5NAU3823View
5Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A44.7NAU3823View
60-153 x sGK9708, RIL (2016)AD_ch19_Dt.05N/A22.8NAU3823View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A119.9NAU3823View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A17.31NAU3823View
Sequence
>NAU3823 ID=NAU3823; Name=NAU3823; organism=Gossypium raimondii; type=genetic_marker; length=206bp
AGAAAAGCGCTGCTGATAGTGTTCCATTGGAGCACATCACCCGTATTTTC
CCCATTCTTGGTTAAGCCTCTAGCTGGGATGAACACTTTTTTGGAGTTAT
TTGTGCCATGTTTTCGTTGACATTGCGACCATTCTCTTTGTTTTTTTGTC
TTGGATATATATATATATAACTGAGAAACAGCTATTTTAGGATAGACTTT
GTCAGC