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Marker Overview
| Name | NAU3736 |
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| Genbank ID | CO118112 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (gta)6 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3736_F: CATGTGCATTTCATCCTGTC |
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| Primer 2 | NAU3736_R: CCAAGTGAGAGGCATTTTCT |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 73.19 | NAU3736b | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 119.08 | NAU3736a | View |
| 3 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 66 | nau3736 | View |
| 4 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch15_Dt.01 | N/A | 77.2 | nau3736 | View |
| 5 | Yumian-1 x 7235, RIL (2015) | AD_ch15_Dt.01 | N/A | 89.4 | nau3736 | View |
| 6 | GX1135 x GX100-2, RIL (2015) | AD_ch15_Dt.01 | N/A | 4.7 | nau3736 | View |
| 7 | GX1135 x GX100-2, RIL (2016) | AD_ch15_Dt.01 | N/A | 4.7 | nau3736 | View |
| 8 | GX1135 x VGX100-2, RIL (2016) | AD_ch15_Dt.01 | N/A | 0 | nau3736 | View |
| 9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch15_Dt.01 | N/A | 64.3 | nau3736 | View |
| 10 | SG 747 x Giza 75, BIL (2013) | AD_ch15_Dt.01 | N/A | 58.6 | nau3736 | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch15_Dt.01 | N/A | 69.5 | NAU3736-190 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch15_Dt.01 | N/A | 68.13 | NAU3736-190 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch15_Dt.01 | N/A | 57 | NAU3736-190 | View |
| 14 | 0-153 x sGK9708, RIL (2016) | AD_ch15_Dt.01 | N/A | 40.1 | MAU3736 | View |
Sequence
>NAU3736 ID=NAU3736; Name=NAU3736; organism=Gossypium raimondii; type=genetic_marker; length=192bp
CATGTGCATTTCATCCTGTCCAGATAAAGGTTTTGAAGATGTAGTAGTAG
TAGTAGTAATGCGTGCAGTAAAAGATACAATGAAGCATAGATAATAACCC
GACCGAAGCTCGTATGTTTGTCGAGTTACTATTATGTAATAAGAAGTTTC
TGCGATAGAACAAGTAGCATAAAGAAAATGCCTCTCACTTGG
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