NAU3546, NAU3546 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3546
Genbank IDCO111221
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ata)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU3546_F: AAACCCTTTCACTTGGGATA
Primer 2NAU3546_R: ATGGACGATGTTTCATTTCA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO111221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeNAU3546:1..540 .
Chr12:31660388..31660927 -
Chr12chromosomeNAU3546:1..540 .
Chr12:2212699..2213238 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch22_Dt.04N/A0NAU3546View
2AD-genome wide Reference Map (2009)AD_ch22_Dt.04N/A62NAU3546View
3Zhongmiansuo-12 x 8891, RIL (2007)AD_ch22_Dt.04N/A32.3NAU3546View
4Prema x 86-1, RIL (2015)AD_ch22_Dt.04N/A7.04NAU3546View
5TM-1 x Hai-7124, BC1 (2007)AD_ch22_Dt.04N/A67.8NAU3546-170View
6TM-1 x Hai-7124, BC1 (2008)AD_ch22_Dt.04N/A68.3NAU3546-170View
7TM-1 x Hai-7124, BC1 (2012)AD_ch22_Dt.04N/A53.4NAU3546-170View
Sequence
>NAU3546 ID=NAU3546; Name=NAU3546; organism=Gossypium raimondii; type=genetic_marker; length=156bp
AAACCCTTTCACTTGGGATATCATTTATTTATAATTAATATAAAATGATA
ATAATAATAATATAGAAAAACAAGACCCAAGTTAAATGCCTATCTTTTAT
GGAATTTTAATTTTAATTTTAAGGGAAAAGATATTATGAAATGAAACATC
GTCCAT