NAU3541, NAU3541 (genetic_marker) Gossypium raimondii

Marker Overview


Name	NAU3541
Genbank ID	CO111036
Type	SSR
Species	Gossypium raimondii
Source Type	EST
Repeat Motif	(caagaa)5
PCR Condition	Annealing temperature: 57
Primer 1	NAU3541_F: ATCCCACATTGCCTTCTTAT
Primer 2	NAU3541_R: CTTTCCCCTCTCAAATACCC
Restriction Enzyme	NotI; EcoRV
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO111036

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D5_03	chromosome	D5_03:7495814..7496020 +
D10_03	chromosome	D10_03:7502435..7502643 +
Chr03	chromosome	Chr03:9481524..9481733 +
Chr03	chromosome	Chr03:55597223..55597430 -
B_03	chromosome	B_03:9330006..9330217 +
Chr05	chromosome	Chr05:60178272..60178476 -
Chr05	chromosome	NAU3541:1..756 . Chr05:56744660..56745590 +
Chr5	chromosome	NAU3541:1..756 . Chr5:35769082..35770012 -

Publications


Year	Publication
2007	Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch03_At.03	N/A	106.29	NAU3541	View
2	AD-genome wide Reference Map (2009)	AD_ch03_At.03	N/A	152	NAU3541	View
3	Yumian-1 x T586, RIL (2006)	AD_ch03_At.03	N/A	19.3	NAU3541	View
4	Yumian-1 x T586, RIL (2015)	AD_ch03_At.03	N/A	40.3	NAU3541	View
5	DH962 X Ji Mian 5, F2 (2015)	AD_ch07_At.07	N/A	70.63	NAU3541	View
6	SG 747 x Giza 75, BIL (2013)	AD_ch03_At.03	N/A	50.5	NAU3541	View
7	TM-1 x Hai-7124, BC1 (2007)	AD_ch03_At.03	N/A	57.9	NAU3541-195	View
8	TM-1 x Hai-7124, BC1 (2008)	AD_ch03_At.03	N/A	55.18	NAU3541-195	View
9	TM-1 x Hai-7124, BC1 (2012)	AD_ch03_At.03	N/A	54.7	NAU3541-195	View
10	Yumian-1 x T586, RIL (2009)	AD_ch03_At.03	N/A	19.4	NAU3541/190y(C3)	View

Sequence

>NAU3541 ID=NAU3541; Name=NAU3541; organism=Gossypium raimondii; type=genetic_marker; length=208bp
ATCCCACATTGCCTTCTTATATTAATCCCTCAAAAGTAAATAGAGAATAT
CAACAAGGGGGGGGGGGAACAAGAACAAGAACAAGAACAAGAACAAGAAA
AGAGAAAAAGAAAGAAATGCGGATATAAAAGGAAAGGAAAAGTCGTAATT
GTTGTGTGTGTGTTTGAGAGAGAGAGAGAGAGAGAGGTGGGTATTTGAGA
GGGGAAAG

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NAU3541, NAU3541 (genetic_marker) Gossypium raimondii