NAU3373, NAU3373 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3373
Genbank IDCO103952
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(acat)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3373_F: GCAATGTTGACCAAAGATCA
Primer 2NAU3373_R: AAGAGCAACAGGAAGTGGAG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO103952
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:52604444..52604682 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:50248506..50248744 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:18107662..18107887 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:49413087..49413323 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:99994291..99994513 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3724.1supercontigscaffold3724.1:84470..84708 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:47834353..47834591 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:52808016..52808252 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:52301253..52301491 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:52724749..52724985 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:50026382..50026620 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:51510911..51511149 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt11chromosomeDt11:51508119..51508327 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5368supercontigscaffold5368:79912..80150 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5368supercontigscaffold5368:77120..77328 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:49991628..49991866 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:53074033..53074293 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:52365505..52365753 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:53569775..53570009 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:49982188..49982434 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:52574807..52575045 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:16415172..16415400 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:13854489..13854705 +Gossypium anomalum (B1) genome NSF_v1n/a
B_11chromosomeB_11:75139027..75139243 -Gossypium anomalum (B1) genome NSF_v1n/a
B_10chromosomeB_10:5018863..5019075 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:49984440..49984664 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:35572748..35572984 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:33471090..33471326 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:50344330..50344568 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:30079036..30079264 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:26758429..26758645 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:32170497..32170737 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:84687325..84687537 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:75186417..75186629 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:83522198..83522402 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A239.2NAU3373bView
2Emian-22 x 3-79, BC1 (2015)AD_ch11_At.11N/A0NAU3373bView
3Emian-22 x 3-79, BC1 (2012)AD_ch11_At.11N/A160NAU3373bView
4Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A19.43NAU3373cView
5AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A49nau3373View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch03_At.03N/A0nau3373View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A15.6nau3373View
8TM-1 x Hai-7124, BC1 (2007)AD_ch21_Dt.11N/A77.2NAU3373-260View
9TM-1 x Hai-7124, BC1 (2008)AD_ch21_Dt.11N/A69.28NAU3373-260View
10TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A110.7NAU3373-260View
Sequence
>NAU3373 ID=NAU3373; Name=NAU3373; organism=Gossypium raimondii; type=genetic_marker; length=229bp
GCAATGTTGACCAAAGATCATTGACCCAATTCACACATATATTTACATAC
ATACATACACACACACATACATACATACATACAAACAAATTAATTGCACA
CAACACAATCTAAGCACCTTTTTCTTTTTCTTTTTTGCTGTTCCAGGGCT
TGAGCACAGCAAGTGCAATAATTACAAAAATTATGAGAACGAGTATAACT
GCAATGCACCTCCACTTCCTGTTGCTCTT