NAU3282, NAU3282 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3282
Genbank IDCO100284
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(cca)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3282_F: AATCAGCAGTCCTCTTGGTC
Primer 2NAU3282_R: TTTCAAAGGGTGGTCAATTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO100284
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:13965499..13965651 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:15474329..15474481 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:13056055..13056207 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:15105287..15105439 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:52986118..52986267 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:10002404..10002556 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:108515640..108515792 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:12697337..12697507 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:20008780..20008932 -Gossypium australe (G2) genome CRI_v1.1n/a
D11chromosomeD11:13387782..13387934 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:15211561..15211713 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:13570417..13570569 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:15602639..15602791 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:13226511..13226663 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:15086638..15086790 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:13606459..13606611 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:15316351..15316503 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:13355264..13355416 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:15721964..15722116 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:15050897..15051049 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt11chromosomeDt11:15047994..15048146 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:16371929..16372081 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16468supercontigscaffold16468:230986..231138 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1637supercontigscaffold1637:604631..604783 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1637supercontigscaffold1637:601728..601880 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:13330639..13330791 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:14851079..14851231 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:13245783..13245935 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:15112185..15112337 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:13151238..13151393 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:15403753..15403905 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:13527111..13527263 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:15493706..15493858 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:13320017..13320169 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:15338017..15338169 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:13847885..13848037 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:15862366..15862518 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:16171002..16171154 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:15791528..15791680 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:14699433..14699588 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:13001098..13001250 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:10990045..10990371 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:11422454..11422630 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:13089273..13089425 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:10317654..10317806 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:10619486..10619638 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:16307400..16307552 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:13283146..13283298 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:163255230..163255382 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
160182 x Jun Mian 1, F2:3 (2007)AD_ch16_Dt.07N/A74.9NAU3282View
Sequence
>NAU3282 ID=NAU3282; Name=NAU3282; organism=Gossypium raimondii; type=genetic_marker; length=150bp
AATCAGCAGTCCTCTTGGTCTTAGCTGTGACATCAGCTCTACTTAAAGAA
GATGATGAAGAAGAAGAAGAAGATGGAGAAGCAGCAGAAAAAACCAGAGA
AGGGAGATCCTTAGCAGTCAAAATCCTAGCAAATTGACCACCCTTTGAAA