NAU3260, NAU3260 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3260
Genbank IDCO099354
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ct)4ca(ct)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3260_F: TTTTGCAGATGTTTGTAGGG
Primer 2NAU3260_R: TTTCTTCAACAGGGGCTAAG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO099354
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:3472029..3472308 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:3443967..3444250 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:3270960..3271241 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:3613419..3613698 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:62633111..62633505 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:2918395..2918662 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:120784523..120784920 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:3226149..3226428 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:4264700..4264977 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:5343631..5343910 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:6876665..6877055 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:3443907..3444186 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:3241362..3241645 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:3385633..3385913 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:3681802..3682083 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:3314708..3314987 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:3534949..3535232 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:3410851..3411130 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:3562155..3562436 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:3352655..3352934 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:3711087..3711370 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:4118714..4118993 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7307supercontigscaffold7307:123702..123981 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17829supercontigscaffold17829:342481..342873 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:3324875..3325156 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:3283584..3283863 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:3342715..3342996 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:3652594..3652873 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:3271785..3272062 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:3685481..3685764 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:3389237..3389516 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:3752137..3752416 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:3302221..3302502 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:3663204..3663483 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:3385459..3385738 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:3748752..3749035 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:3728391..3728672 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:3654056..3654337 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:60115783..60116177 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:3636585..3636860 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:3151862..3152145 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:2964068..2964347 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:2972061..2972340 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:3357471..3357750 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:2542694..2542973 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:2534087..2534369 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:2757912..2758193 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:3923572..3923853 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:3091864..3092147 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch11_At.11N/A0NAU3260View
2Zhongmiansuo-12 x 8891, RIL (2007)AD_ch10_At.10N/A0NAU3260View
Sequence
>NAU3260 ID=NAU3260; Name=NAU3260; organism=Gossypium raimondii; type=genetic_marker; length=190bp
TTTTGCAGATGTTTGTAGGGCAGCTCTCTCTCACTCTCTCTNTGCATTAA
TATTAATGGAAAAAACATAAGTTGTCGTTGAGCTGAGATGAGTTGAAAAT
TTTTTGTCTTTGGTCCTCCACATCCCACAATACACTTCCATTATCCTGAG
AGTGAGAAAAGAGATTGGGCCTTAGCCCCTGTTGAAGAAA