NAU3132, NAU3132 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3132
Genbank IDCO093987
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tga)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU3132_F: GGTTGAACCCTGGTAGAAGA
Primer 2NAU3132_R: ATCCCAAATAACCCACCTG
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO093987
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:60335154..60335322 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:56760319..56760487 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53092558..53092744 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:8088029..8088206 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:13583365..13583536 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold347.1supercontigscaffold347.1:245731..245899 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56966715..56966883 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59550282..59550450 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:60207164..60207332 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:59410971..59411139 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56689098..56689266 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:59380041..59380209 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7158supercontigscaffold7158:78166..78334 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:56796706..56796874 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58722035..58722203 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:58291971..58292139 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60501112..60501280 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:57181130..57181295 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:60100441..60100609 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:53979177..53979363 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:93413872..93414055 -Gossypium anomalum (B1) genome NSF_v1n/a
chr04chromosomechr04:41572643..41572814 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38055029..38055326 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:57713042..57713213 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36443955..36444129 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:30661659..30661827 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:37048642..37048810 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:108499877..108500054 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:95434481..95434670 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:18746538..18746703 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A49.7NAU3132View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A42NAU3132View
Sequence
>NAU3132 ID=NAU3132; Name=NAU3132; organism=Gossypium raimondii; type=genetic_marker; length=187bp
GGTTGAACCCTGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
GGAAGAGAAACAAACCACGGGTTTTTGAATAGTCGCAGTGAAGAAACGAG
GAGGCATCAAAGTGAAAGCCAATTTGCTAGCCATTGATGATGATGATGAT
GAATAAGGCATGGGGAAGCAGGTGGGTTATTTGGGAT