NAU3014, NAU3014 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU3014
Genbank IDCO089263
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(tatg)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU3014_F: TCGATAGCATCCAAGAAACA
Primer 2NAU3014_R: AACTTGCACTCCCCATACAT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO089263
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:21621843..21622027 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:23454511..23454711 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:20398827..20399011 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:22542279..22542489 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:19175408..19175608 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:17131487..17131683 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:23162107..23162321 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:41196398..41196592 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:89076789..89076987 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:47562455..47562639 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:38127042..38127242 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:20816650..20816834 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:20935383..20935583 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:20925612..20925796 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:23081319..23081519 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:20446273..20446457 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22451038..22451238 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:20776088..20776272 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:23135991..23136191 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:20652934..20653118 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:23280201..23280401 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:18080973..18081183 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9304supercontigscaffold9304:28103..28313 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18853supercontigscaffold18853:125226..125410 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:20761558..20761742 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:22216942..22217152 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:20764722..20764906 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:22900258..22900468 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:20643872..20644056 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:22719843..22720043 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:21039500..21039684 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:23055391..23055601 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:20723056..20723240 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:22460302..22460520 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:21237651..21237835 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:23493007..23493207 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:24712628..24712822 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:23089016..23089230 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:19255243..19255443 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:63465223..63465421 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:19805237..19805435 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:17735040..17735236 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:16436024..16436222 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:20460136..20460342 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16733335..16733533 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09_6271315chromosomeChr09_6271315:3911..4109 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:25012323..25012523 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:19783932..19784130 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:107015066..107015264 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeNAU3014:1..783 .
Chr09:19123495..19124635 +		n/a
Chr9chromosomeNAU3014:1..783 .
Chr9:24669925..24671065 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A139.05NAU3014View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A144NAU3014View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A118.3NAU3014View
4Hai-7124 x Junmian-1, F2 (2008) partAD_ch05_At.05N/A97.1NAU3O14View
5TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A100.7NAU3014-210View
6TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A88NAU3014-210View
7TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A116.6NAU3014-210View
Sequence
>NAU3014 ID=NAU3014; Name=NAU3014; organism=Gossypium raimondii; type=genetic_marker; length=201bp
TCGATAGCATCCAAGAAACAAGCCGCCGCTTCATCTGTTGCCAGATCCGG
TGTCTCCGCCAAAGGCGAGACGGTTGCCGCCGTACAGTTATATTAATTAG
CGTGGCCAAAAAGGAATTTTACCAAGCCCAATTTCCATGCTACTAGAAGG
AATCAAAATATATGTATGTATGTATGGATGGATGTATGGGGAGTGCAAGT
T