NAU2701, NAU2701 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2701
Genbank IDCO075589
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ttc)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU2701_F: TTCCTCTTCACCGCTCTATC
Primer 2NAU2701_R: AGGGAGGAGACAAGGTCTTT
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO075589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:60098478..60098689 -
A04chromosomeA04:4002823..4003031 -
CM018205.1chromosomeCM018205.1:4390862..4391073 +
CM018219.1chromosomeCM018219.1:59047550..59047761 -
D5_05chromosomeD5_05:53442228..53442435 +
KI_05chromosomeKI_05:47449343..47449551 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:91840426..91840634 +
D10_05chromosomeD10_05:6239588..6239796 -
CM016618.1chromosomeCM016618.1:5210417..5210625 +
Dt_chr9chromosomeDt_chr9:3556300..3556511 +
Dt_chr13chromosomeDt_chr13:11885239..11885447 +
scaffold747_A04supercontigscaffold747_A04:41249..41457 +
scaffold3995_D05supercontigscaffold3995_D05:29307..29518 +
Ghir_D05chromosomeGhir_D05:59024837..59025048 -
A04chromosomeA04:4213641..4213849 +
D05chromosomeD05:59775047..59775258 -
A04chromosomeA04:4383405..4383613 +
D05chromosomeD05:59699436..59699647 -
A04chromosomeA04:4111709..4111917 +
D05chromosomeD05:58422158..58422369 -
Dt05chromosomeDt05:57980656..57980867 -
Dt05chromosomeDt05:57976983..57977194 -
scaffold5488supercontigscaffold5488:148100..148311 +
scaffold8996supercontigscaffold8996:120656..120867 -
scaffold8996supercontigscaffold8996:116983..117194 -
Gbar_A04chromosomeGbar_A04:4602142..4602353 +
Gbar_D05chromosomeGbar_D05:60385683..60385894 -
A04chromosomeA04:4471092..4471303 +
D05chromosomeD05:61880849..61881060 -
CM017613.1chromosomeCM017613.1:4732224..4732432 +
CM017627.1chromosomeCM017627.1:58664041..58664249 -
CM017639.1chromosomeCM017639.1:5021945..5022153 +
CM017653.1chromosomeCM017653.1:61269124..61269317 -
CM017691.1chromosomeCM017691.1:4509672..4509883 +
CM017705.1chromosomeCM017705.1:59950225..59950436 -
A04chromosomeA04:4451292..4451500 +
D05chromosomeD05:62120799..62121010 -
Chr05chromosomeChr05:89412772..89412980 -
Chr05chromosomeChr05:92984464..92984672 -
Chr05chromosomeChr05:54006960..54007168 -
B_05chromosomeB_05:7568178..7568386 -
Chr09chromosomeChr09:54128441..54128649 -
Chr_09chromosomeChr_09:49834486..49834694 +
Chr_09chromosomeChr_09:49831662..49831870 +
Chr09chromosomeChr09:58282767..58282975 -
Chr09chromosomeChr09:48007641..48007849 +
Chr09chromosomeChr09:50197906..50198117 +
E05chromosomeE05:98833401..98833612 -
F05chromosomeF05:72295803..72296008 -
Chr05chromosomeChr05:14965013..14965221 +
Chr09chromosomeNAU2701:1..711 .
Chr09:67280820..67282319 -
Chr9chromosomeNAU2701:1..711 .
Chr9:43368923..43370422 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch04_At.04N/A158nau2701View
2GX1135 x GX100-2, F2 (2013)AD_ch04_At.04N/A0nau2701View
3GX1135 x GX100-2, RIL (2016)AD_ch04_At.04N/A2.6nau2701View
4GX1135 x VGX100-2, RIL (2016)AD_ch04_At.04N/A90.1nau2701View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A34.5nau2701View
6901-001 x sGK156, F2 (2019)AD_ch19_Dt.05N/A41.11nau2701View
7TM-1 x Hai-7124, BC1 (2007)AD_ch04_At.04N/A2.2NAU2701-200View
8TM-1 x Hai-7124, BC1 (2008)AD_ch04_At.04N/A0NAU2701-200View
9TM-1 x Hai-7124, BC1 (2012)AD_ch04_At.04N/A124.5NAU2701-200View
Sequence
>NAU2701 ID=NAU2701; Name=NAU2701; organism=Gossypium raimondii; type=genetic_marker; length=209bp
TTCCTCTTCACCGCTCTATCAGCCGGCGTTGTTGAAGCTTCCGGCGTTAT
TTTCTCTCTCTTCTCCGCCAAAACGTTATCCTCCGAGATTACATACAACG
AAGGTTTCCAGTCAGGAGTCGTAGAGAATGGCGTCCCTACCTTTACCCTC
TTCTTCTTCTTCTTCAGTGCCACCATTTTAGGAGCCATAAAAGACCTTGT
CTCCTCCCT