NAU2680, NAU2680 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2680
Genbank IDCO074936
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ttg)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU2680_F: TTTTTGGTCCTATTGGTGGT
Primer 2NAU2680_R: GCTTCAGGGTTTCTTGCTAA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO074936
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:51351916..51352144 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:46761334..46761568 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016620.1chromosomeCM016620.1:7141750..7141984 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt07chromosomeDt07:55626628..55626856 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11989supercontigscaffold11989:560874..561102 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:51761624..51761852 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:52476069..52476297 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:52241099..52241327 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:53278244..53278472 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:52387676..52387904 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr07chromosomeChr07:4712610..4712844 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:78054512..78054743 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:51250249..51250477 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:39242475..39242703 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:50963052..50963280 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:35932267..35932495 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:28295395..28295623 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:35058388..35058616 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:6793871..6794099 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:77924549..77924777 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:153301982..153302210 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeNAU2680:1..620 .
Chr01:47362695..47363560 +		n/a
Chr1chromosomeNAU2680:1..620 .
Chr1:5133128..5133993 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A173nau2680View
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch16_Dt.07N/A27.2nau2680View
3(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.07N/A69nau2680View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A116nau2680View
5SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A94.3nau2680View
6TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A102.3NAU2680-290View
7TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A103.37NAU2680-290View
8H16 x T586, F2 (2009)AD_ch16_Dt.07N/A103.4NAU2680-290View
9TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A32.3NAU2680-290View
Sequence
>NAU2680 ID=NAU2680; Name=NAU2680; organism=Gossypium raimondii; type=genetic_marker; length=236bp
TTTTTGGTCCTATTGGTGGTGGCTTAGGCTTAGGGGCTTCACCCCCTTCA
GGTGGTGCAGTGGCGGTTGCTGGGGTTGGAGAGGGTGGTGGTGGTGGTGG
TGAAGCCTCATCAGCTGCCCTCACAACAAGCCTTGAAGTGTTGTTGGTCT
TGGATGGGAAAAACACCATGTTGTTGTTGTTGTTGGTCTTAGAAGTCCCT
GCAGAAACATTGGGTGTTAGCAAGAAACCCTGAAGC