NAU2658, NAU2658 (genetic_marker) Gossypium raimondii

Marker Overview


Name	NAU2658
Genbank ID	CO074299
Type	SSR
Species	Gossypium raimondii
Source Type	EST
Repeat Motif	(ta)18
PCR Condition	Annealing temperature: 57
Primer 1	NAU2658_F: ACCGGACAATATGGGTAAAA
Primer 2	NAU2658_R: CAACAAGTACATGCACAGCA
Restriction Enzyme	NotI; EcoRV
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO074299

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D09	chromosome	D09:38660580..38660777 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
At_chr6	chromosome	At_chr6:48712540..48712737 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
Dt_chr6	chromosome	Dt_chr6:13229593..13229790 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold4325_D09	supercontig	scaffold4325_D09:31837..32034 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D09	chromosome	Ghir_D09:38704116..38704313 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D09	chromosome	D09:38440927..38441124 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D09	chromosome	D09:38461101..38461298 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D09	chromosome	D09:36539938..36540139 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017631.1	chromosome	CM017631.1:37525765..37525964 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017657.1	chromosome	CM017657.1:38885203..38885404 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017709.1	chromosome	CM017709.1:38109827..38110026 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D09	chromosome	D09:40100821..40101018 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr06	chromosome	Chr06:37106247..37106452 +	Gossypium thurberi (D1-5) genome CRI_v1	n/a
F09	chromosome	F09:56020135..56020338 +	Gossypium longicalyx (F1) genome NSF_v1	n/a

Publications


Year	Publication
2007	Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	AD-genome wide Reference Map (2009)	AD_ch23_Dt.09	N/A	114	nau2658	View
2	Zhongmiansuo-12 x 8891, RIL (2007)	AD_ch23_Dt.09	N/A	28.1	nau2658	View
3	DH962 X Ji Mian 5, F2 (2015)	AD_ch09_At.09	N/A	68.15	nau2658	View
4	DH962 X Ji Mian 5, F2 (2015)	AD_ch23_Dt.09	N/A	68.15	nau2658	View
5	0-153 x sGK9708, RIL (2016)	AD_ch23_Dt.09	N/A	116.6	nau2658	View
6	DH962 x Ji Mian 5, RIL (2015)	AD_ch09_At.09	N/A	22.5	nau2658	View
7	DH962 x Ji Mian 5, RIL (2015)	AD_ch23_Dt.09	N/A	22.5	nau2658	View

Sequence

>NAU2658 ID=NAU2658; Name=NAU2658; organism=Gossypium raimondii; type=genetic_marker; length=229bp
ACCGGACAATATGGGTAAAAAGTTCTGTAATTTGTTTAAAATACATTCAA
ATTTGCATCTTTTTACCCAAAAAAGTATATATATATATATATATATATAT
ATATATATATATCTAAACTCTAACGTCTCTGTAAAAATCGGGAAACAAAA
TGAAAAAACAAAAAAAAATTTGTCGGGGGGATTCATGACCCCCAAACAAT
CCAATAACTTGCTGTGCATGTACTTGTTG

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NAU2658, NAU2658 (genetic_marker) Gossypium raimondii