NAU2641, NAU2641 (genetic_marker) Gossypium raimondii

Marker Overview
NameNAU2641
Genbank IDCO073651
TypeSSR
SpeciesGossypium raimondii
Source TypeEST
Repeat Motif(ta)4t(ta)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU2641_F: TCTTTTGAGGGTCACCATTT
Primer 2NAU2641_R: AACCCAGTTTTTGTTTTCCA
Restriction EnzymeNotI; EcoRV
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO073651
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr06chromosomeChr06:2515739..2515953 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A114.36NAU2641View
2AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A35NAU2641View
30-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A104.38NAU2641View
40-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A65.1NAU2641View
50-153 x sGK9708, RIL (2017)AD_ch25_Dt.06N/A32.46NAU2641View
6TM-1 x Hai-7124, BC1 (2007)AD_ch25_Dt.06N/A46.9NAU2641-360View
7TM-1 x Hai-7124, BC1 (2008)AD_ch25_Dt.06N/A92.1NAU2641-360View
8TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A99.5NAU2641-360View
Sequence
>NAU2641 ID=NAU2641; Name=NAU2641; organism=Gossypium raimondii; type=genetic_marker; length=215bp
TCTTTTGAGGGTCACCATTTTCATAGTCGCCAGTGTTTTGTTCAATGAAC
ATGGTGTTCTTTTGCATCTCTCTGGCCATATATCTCTCTGCCTTAAAGCT
GGGGTTTGTTTATAATGACGAGAAGAGTGTGTATATATATTATATATATA
TAAAGATATATATGTTGAAGGAAAGGGTTAAATGTACCTTAAAAGTGGAA
AACAAAAACTGGGTT