NAU2306, NAU2306 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2306
Genbank IDDT049351
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049351.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2306_F: TCGGGTACCTGTAAGAGAGC
Primer 2NAU2306_R: TGTTGCCGAATAACAATCAC
Product Length240
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049351
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:65359277..65359518 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:119515601..119515838 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:61544439..61544680 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:114509349..114509586 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:124559661..124559902 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr12chromosomeDt_chr12:10928928..10929169 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:52738599..52738836 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:62108406..62108647 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:99606282..99606519 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:64496498..64496739 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:118029626..118029863 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:64907948..64908189 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:120689268..120689505 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:64351523..64351764 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:120867225..120867462 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:61642360..61642601 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:116594792..116595029 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:64511909..64512150 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold41163supercontigscaffold41163:1846..2083 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold193supercontigscaffold193:164762..165003 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:61659386..61659627 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:115169208..115169445 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:63471951..63472192 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:116153851..116154088 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63278126..63278367 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:65390876..65391115 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:124267235..124267472 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:61984957..61985198 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:115351211..115351448 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:65137487..65137728 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:122763608..122763845 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:128009858..128010099 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049351.1DT049351.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A91.19nau2306View
2AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A196nau2306View
3TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A96.3nau2306View
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A77nau2306View
5TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A51.58NAU2306-380View
6TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A60.2NAU2306-380View
7TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A114.8NAU2306-380View
8TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A97.23NAU2306View
Sequence
>NAU2306 ID=NAU2306; Name=NAU2306; organism=Gossypium hirsutum; type=genetic_marker; length=240bp
TCGGGTACCTGTAAGAGAGCTTGTAAAACTATAACATCCATGTCCGAGTG
GCGGGTTTATCAGCTACACGCTGAAATACCTCTTCTTCGTGATATATATA
TATATGCACACACACGACAGTAACTGCAAACTTCTTAATCACCCCGAGAT
CGTGAAAAGTTTATTATATTTAGCAGTCAGAACTCACAAATTCACTTATC
TCGTCCATAACCGTATGGAAGTGATTGTTATTCGGCAACA