NAU2296, NAU2296 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2296
Genbank IDDT049131
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049131.1
Source TypeEST
Repeat MotifCTG(10)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2296_F: TATGCAAACAAACTGCTGCT
Primer 2NAU2296_R: GTGCTGTGTCGTGTAGGTGT
Product Length117
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049131
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:72297115..72297229 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:58628385..58628484 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:82285001..82285106 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A05chromosomeA05:65523147..65523261 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:63302876..63302990 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:49297861..49297954 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:64651822..64651936 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:63429126..63429240 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:62414754..62414868 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:64453101..64453200 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6285supercontigscaffold6285:109286..109385 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold564supercontigscaffold564:46527..46620 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:43426720..43426813 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:59084341..59084440 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:61640288..61640387 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:60598144..60598258 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:63898763..63898874 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:60897832..60897931 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:65141094..65141208 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:66543742..66543844 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:82312632..82312737 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F05chromosomeF05:53340460..53340589 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049131.1DT049131.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Hai-7124 x Junmian-1, F2 (2008) partAD_ch05_At.05N/A133.7NAU2296View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A202NAU2296View
3TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A126.36NAU2296View
4TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A74.3NAU2296View
5TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A148.1NAU2296-110View
6TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A136.31NAU2296-110View
7TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A68.6NAU2296-110View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A74.31NAU2296View
Sequence
>NAU2296 ID=NAU2296; Name=NAU2296; organism=Gossypium hirsutum; type=genetic_marker; length=117bp
TATGCAAACAAACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGTATTA
TGTCATCTTTATCATCAATGATACCAACAATGTTTGCTTCTACAAGAACA
CCTACACGACACAGCAC