NAU2273, NAU2273 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2273
Genbank IDDT048764
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048764.1
Source TypeEST
Repeat MotifTCA(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2273_F: GTCGCAATTCCCTGTATTCT
Primer 2NAU2273_R: GAGGACATTGATGACGATGA
Product Length247
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048764
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:33093739..33093985 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:31880696..31880942 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:32649564..32649810 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:34674228..34674475 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:76249552..76249802 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:39851083..39851329 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:32934608..32934854 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:32038573..32038819 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1830supercontigscaffold1830:339193..339439 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1830supercontigscaffold1830:347977..348225 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13894supercontigscaffold13894:29084..29332 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:30695227..30695473 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:32209415..32209661 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:32324439..32324685 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:32796045..32796291 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:32059544..32059790 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:33396275..33396521 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:33709556..33709802 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:33037467..33037713 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:53810379..53810628 +Gossypium anomalum (B1) genome NSF_v1n/a
chr09chromosomechr09:23503033..23503278 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:22172073..22172321 -Gossypium harknessii (D2-2) genome ISU_v1n/a
F05chromosomeF05:28611997..28612250 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048764.1DT048764.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch19_Dt.05N/A5.5NAU2273View
2Yumian-1 x T586, RIL (2015)AD_ch19_Dt.05N/A115NAU2273View
3Yumian-1 x T586, RIL (2009)AD_ch19_Dt.05N/A15.3NAU2273/300t(C3)View
4PD 94042 x (AD)4-08, F2 (2016)AD_ch05_At.05N/A180.6NAU2273View
5TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A43.8NAU2273-400View
Sequence
>NAU2273 ID=NAU2273; Name=NAU2273; organism=Gossypium hirsutum; type=genetic_marker; length=247bp
GTCGCAATTCCCTGTATTCTTCTAGTCTCTTAAGACCTACAAACAACATA
AGTTGGATCATTCAGAACTTTAAAAAGGCATACTACAAAGACAAAGAACA
TAGTTATGGACTTCAATTATCTATCAGGTTCTGCTCTATCCTCGGATTAT
CAAAACCTTTTACTGATCAGAGTTTTCCGCCATTGCCTGGGTTCTCATCG
TATTCATCATCATCATCACCATCATCATCATCGTCATCAATGTCCTC