NAU2150, NAU2150 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2150
Genbank IDDT046820
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT046820.1
Source TypeEST
Repeat MotifCATA(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2150_F: GCACTGGAGCTGATCCTAAT
Primer 2NAU2150_R: TGGTAAATGCAACTTGTCCA
Product Length229
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT046820
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:44021425..44021651 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:44401268..44401502 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_02chromosomeD10_02:42783918..42784148 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:20443643..20443869 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:38033193..38033419 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:43948373..43948599 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:45393239..45393465 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:44803978..44804204 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:44085079..44085305 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7258supercontigscaffold7258:234922..235156 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:42822292..42822526 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:45298929..45299163 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:43759542..43759768 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:45304512..45304738 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:46045235..46045461 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr_03chromosomeChr_03:23601810..23602040 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:25780550..25780769 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT046820.1DT046820.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A84.66NAU2150View
2TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A67.7NAU2150View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A66.9NAU2150View
4TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A67.65NAU2150View
Sequence
>NAU2150 ID=NAU2150; Name=NAU2150; organism=Gossypium hirsutum; type=genetic_marker; length=229bp
GCACTGGAGCTGATCCTAATCAAGCACTNTCAGGNATCTGAGTACAACCC
GAGAACCAAGGATGTCCATACATACATACATACATACATACATAAATCAC
CCACATAGAAATAGAAACAAGGAACATCGATTATTTTCAAAGATACATTA
CTTTTGCAGAATACTGAGATCAAAATCCATGAGCNCTAGGATCCTTTAAC
AATTGTTACTGGACAAGTTGCATTTACCA