NAU2132, NAU2132 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2132
Genbank IDDT046432
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT046432.1
Source TypeEST
Repeat MotifATAC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2132_F: GCAGGGAAAGAAAGATCAAA
Primer 2NAU2132_R: CATTCATGTGCTTCGACATT
Product Length197
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT046432
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:51153913..51154107 +
Dt_chr8chromosomeDt_chr8:44392142..44392336 +
D12chromosomeD12:47374553..47374747 +
Ghir_D12chromosomeGhir_D12:50200807..50201001 +
D12chromosomeD12:49220133..49220327 +
D12chromosomeD12:50269456..50269650 +
D12chromosomeD12:48063247..48063441 +
D12chromosomeD12:50276475..50276669 +
chr08chromosomechr08:35792296..35792655 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT046432.1DT046432.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch12_At.12N/A0NAU2132View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A118NAU2132View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A71.8NAU2132View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A99.75NAU2132View
Sequence
>NAU2132 ID=NAU2132; Name=NAU2132; organism=Gossypium hirsutum; type=genetic_marker; length=197bp
GCAGGGAAAGAAAGATCAAACAAAAAGGAAAGAAAAAAAGCTAAAAGTGA
TCACTACATCCATACCTTAATTAAATATTAATATTACTGGGTCATGCCCA
AAAACGCATCTTTTTCACCTCTCCTACTAAAATGATCACTACATACATAA
ATACATACATACATACATGCATGCATGAATGTCGAAGCACATGAATG