NAU2111, NAU2111 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2111
Genbank IDDR044195
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044195.1
Source TypeEST
Repeat MotifAG(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2111_F: GGAAAAAGGCCAAGACACTA
Primer 2NAU2111_R: CCTCCCTTTCTTCTTCCTCT
Product Length200
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:1755019..1755219 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:1806846..1807048 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:95523687..95523895 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold743.1supercontigscaffold743.1:204534..204734 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:1727708..1727908 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:59566400..59566598 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:2367426..2367626 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:1673847..1674047 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:1753563..1753763 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:1691727..1691926 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:1271088..1271290 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt05chromosomeDt05:59323161..59323361 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1811supercontigscaffold1811:446362..446564 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4057supercontigscaffold4057:199701..199901 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:1857633..1857835 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:1705310..1705512 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:1879824..1880024 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:1986972..1987176 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:1996340..1996542 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:1768831..1769031 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:92974525..92974734 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:41601301..41601516 -Gossypium gossypioides (D6) genome ISU_v1n/a
F05chromosomeF05:74893019..74893226 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:12446996..12447205 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044195.1DR044195.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch19_Dt.05N/A24.7NAU2111View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A330NAU2111View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A0NAU2111View
Sequence
>NAU2111 ID=NAU2111; Name=NAU2111; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
GGAAAAAGGCCAAGACACTATCTGGAAAAAAAATAAATGGAATAAAAAAA
AATTTAAGAGAGAGAAAGTGGAAATAAAAATAAAAATAAAAAATAAAAAC
AACAGAAGAGAGAGAGGGGAGGGTGTGTGAGGGTTTTTTTTTGAGAGAGA
AAAGGTGTNAAGAGATGGGGCAGATCGTGAAGAGGAAGAAGAAAGGGAGG