NAU2023, NAU2023 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2023
Genbank IDDR044144
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044144.1
Source TypeEST
Repeat MotifAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2023_F: GATCGCTGATTGGGATTC
Primer 2NAU2023_R: CCCTTTCCTTCTTTTTCCTC
Product Length193
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044144
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:4587772..4587962 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:4318018..4318208 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00015610_CRI-A2_v1.0.a1chromosometig00015610_CRI-A2_v1.0.a1:197288..197478 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:41121337..41121527 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:4346835..4347025 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:4397489..4397679 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:4232123..4232313 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:4454520..4454710 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:4423785..4423975 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1473supercontigscaffold1473:122926..123116 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:4283442..4283632 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:4225339..4225529 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:4162700..4162890 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:4479228..4479410 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:4097958..4098148 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:4453111..4453301 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:7911384..7911574 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044144.1DR044144.1Gossypium hirsutumsequence_feature


Sequence
>NAU2023 ID=NAU2023; Name=NAU2023; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
GATCGCTGATTGGGATTCAAATAGACACATTCTGATTGGGATCCAAATGG
GANCTTCAAGTAGACTTCTTCTATGATCCAAATCATATTATAAATTTATA
ACATGTAATACCATTTAAGAACTTCATATATATATATAATTAGGTTTCTA
ATCTATATCTGTAATCTATAAGAGAGGAAAAAGAAGGAAAGGG