NAU2021, NAU2021 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2021
Genbank IDDR044142
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044142.1
Source TypeEST
Repeat MotifTCC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2021_F: TAGTCCCCAAATGGATTCTC
Primer 2NAU2021_R: AAGAGCGGAAGCAAATGTAG
Product Length169
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044142
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:40654068..40654236 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:74158410..74158578 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:74134224..74134392 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:74110103..74110271 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:37584852..37585020 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:71348007..71348175 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:21789809..21789977 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:42245865..42246033 +Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:30298670..30298838 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:32729046..32729214 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:100653091..100653259 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:3034420..3034587 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4614.1supercontigscaffold4614.1:34773..34941 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:36843281..36843449 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:60372801..60372969 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold2663supercontigScaffold2663:108182..108350 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:78994770..78994938 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:78970528..78970696 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:39216095..39216263 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:80256707..80256875 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:39927476..39927644 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:77106618..77106786 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:77093925..77094091 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:37696574..37696742 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:74241081..74241249 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold652supercontigscaffold652:271557..271725 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold652supercontigscaffold652:269274..269442 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5921supercontigscaffold5921:219971..220139 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5921supercontigscaffold5921:214437..214605 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:36986495..36986663 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:73664409..73664577 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:38177465..38177633 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:73402516..73402684 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:37930249..37930417 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:74829729..74829897 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:40397311..40397479 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:77675920..77676088 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:38684940..38685108 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:73698693..73698861 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:40010909..40011077 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:80363349..80363517 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:80013987..80014155 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:87055433..87055601 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:35978428..35978596 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:60820592..60820760 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:36298300..36298468 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:27766015..27766270 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:25498743..25498911 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:37323295..37323463 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:24271560..24271847 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:81922440..81922608 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:65093429..65093597 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:35813375..35813543 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044142.1DR044142.1Gossypium hirsutumsequence_feature


Sequence
>NAU2021 ID=NAU2021; Name=NAU2021; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
TAGTCCCCAAATGGATTCTCCCTTTCCGTTCAAATGGCAACCCCTCCCCT
TTCATCCCCTACTTATCTCACCANCAATTTAGGCGTCGGCTACGCCATCG
TCGTCGNCCTCGGCTTCCTCCTCCTCCTCTCCACTCTCCTCCTCGCTTCC
TACATTTGCTTCCGCTCTT