NAU1370, NAU1370 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1370
Genbank IDBF270416
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GAT)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU1370_F: GATCAGTCCGATGATGATGA
Primer 2NAU1370_R: AGCCTGGAATTCAAGTTCTG
Product Length237
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF270416
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:46748111..46748423 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:44930588..44930903 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:25696016..25696326 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:50179494..50179806 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:36242683..36243001 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:85899669..85899987 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr10chromosomeAt_chr10:16986685..16986997 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:26548583..26548889 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:44043747..44044059 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:72477728..72478040 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:74374110..74374422 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:73216065..73216377 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:71069618..71069930 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D06chromosomeD06:26355235..26355541 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold500supercontigscaffold500:296707..297022 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:44938484..44938799 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:69241483..69241798 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:46342012..46342324 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:48570158..48570470 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:45861947..45862262 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:99491415..99491727 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:47697206..47697518 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:49398907..49399219 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:50975749..50976061 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:25523931..25524249 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:58162614..58162923 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:26121495..26121813 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:19891662..19891974 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10_6014441chromosomeChr10_6014441:7819..8125 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:15437405..15437725 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:18822086..18822404 -Gossypium lobatum (D7) genome ISU_v1n/a
F06chromosomeF06:40885475..40885793 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A06N/A115NAU1370View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A47.3NAU1370View
Sequence
>NAU1370 ID=NAU1370; Name=NAU1370; organism=Gossypium arboreum; type=genetic_marker; length=237bp
GATCAGTCCGATGATGATGACGACGATGTAGAAGAAGAAGATGATGATGA
TGATGATGAAGATGAAGAAGGAGGAGAAGGAGAAGGAGAAGTAGAAGAAG
CAGATGCTGGTCAGTCTGAACAGAGCTTAGACCCCTCTCATTTGAAACGC
CTCCGCAGGAAGCTTTCTAATAAGGAGTCTGCCAGGCGATCAAGGAAAAG
AAAGCAAGAGCAACTGGCAGAACTTGAATTCCAGGCT