NAU1363, NAU1363 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1363
Genbank IDBF271302
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GGTTCA)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1363_F: TTACGATCTGCTGAAATCCA
Primer 2NAU1363_R: CAATGTTAACGGAGCAAACA
Product Length215
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF271302
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:20336737..20336950 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A01chromosomeA01:27405221..27405429 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:19500092..19500305 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018202.1chromosomeCM018202.1:25385708..25385922 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_01chromosomeKI_01:11396590..11396786 -Gossypioides kirkii genome ISU_v3
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:46810542..46810756 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:41781798..41782012 +Gossypium turneri (D10) genome NSF_v1_a2
CM016614.1chromosomeCM016614.1:37200761..37200969 -Gossypium australe (G2) genome CRI_v1.1
At_chr2chromosomeAt_chr2:34303299..34303512 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:18694432..18694645 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A01chromosomeA01:26047069..26047277 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:19984631..19984844 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:26010301..26010509 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:19539019..19539232 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:25851841..25852049 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:19550629..19550842 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:26462119..26462327 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:19904246..19904459 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:26323724..26323932 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold23817supercontigscaffold23817:29149..29362 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11830supercontigscaffold11830:15496..15710 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01chromosomeGbar_D01:20105924..20106137 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A01chromosomeGbar_A01:25528868..25529082 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:19848387..19848600 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A01chromosomeA01:25396101..25396315 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:19834517..19834730 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:27111981..27112201 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:20730537..20730750 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:26604355..26604569 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:19802470..19802683 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017688.1chromosomeCM017688.1:25538208..25538422 -Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:20260846..20261059 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:26648651..26648859 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:27195023..27195237 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:46923392..46923606 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_01chromosomeB_01:26690530..26690738 -Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:19640260..19640462 -Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:16965115..16965903 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_02chromosomeChr_02:14486512..14486726 -Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:19186581..19186801 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:17404691..17404899 -Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:12515528..12515726 -Gossypium gossypioides (D6) genome ISU_v1
Chr02chromosomeChr02:15826593..15826813 -Gossypium lobatum (D7) genome ISU_v1
E01chromosomeE01:29990430..29990638 -Gossypium stocksii (E1) genome NSF_v1
F01chromosomeF01:22606549..22606756 -Gossypium longicalyx (F1) genome NSF_v1
Chr01chromosomeChr01:149288480..149288682 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A47.6NAU1363View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A88.2NAU1363View
Sequence
>NAU1363 ID=NAU1363; Name=NAU1363; organism=Gossypium arboreum; type=genetic_marker; length=215bp
TTACGATCTGCTGAAATCCATTTGATCCATCTCTTCTCGGAAAGAAAGTT
TAAAGAACATGGTGCGATGAAGCAGTGGGAGAAAGAGATAGGAGATGGCT
AGAGAAGGCAGAGGAGCCAAATGGGGTGGTCATGGTTTGGGTTCAGGTTC
AGGTTCAGGTTCGGGTCAGTGCTCCTATAAAAGGATCACTGTGATTGTTT
GCTCCGTTAACATTG