NAU1363, NAU1363 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1363
Genbank IDBF271302
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GGTTCA)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1363_F: TTACGATCTGCTGAAATCCA
Primer 2NAU1363_R: CAATGTTAACGGAGCAAACA
Product Length215
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF271302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:20336737..20336950 -
A01chromosomeA01:27405221..27405429 -
CM018215.1chromosomeCM018215.1:19500092..19500305 -
CM018202.1chromosomeCM018202.1:25385708..25385922 -
KI_01chromosomeKI_01:11396590..11396786 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:46810542..46810756 +
D10_01chromosomeD10_01:41781798..41782012 +
CM016614.1chromosomeCM016614.1:37200761..37200969 -
At_chr2chromosomeAt_chr2:34303299..34303512 +
D01chromosomeD01:18694432..18694645 -
A01chromosomeA01:26047069..26047277 -
Ghir_D01chromosomeGhir_D01:19984631..19984844 -
Ghir_A01chromosomeGhir_A01:26010301..26010509 -
D01chromosomeD01:19539019..19539232 -
A01chromosomeA01:25851841..25852049 -
D01chromosomeD01:19550629..19550842 -
A01chromosomeA01:26462119..26462327 -
D01chromosomeD01:19904246..19904459 -
A01chromosomeA01:26323724..26323932 -
scaffold23817supercontigscaffold23817:29149..29362 +
scaffold11830supercontigscaffold11830:15496..15710 +
Gbar_D01chromosomeGbar_D01:20105924..20106137 -
Gbar_A01chromosomeGbar_A01:25528868..25529082 -
D01chromosomeD01:19848387..19848600 -
A01chromosomeA01:25396101..25396315 -
CM017623.1chromosomeCM017623.1:19834517..19834730 -
CM017610.1chromosomeCM017610.1:27111981..27112201 -
CM017649.1chromosomeCM017649.1:20730537..20730750 -
CM017636.1chromosomeCM017636.1:26604355..26604569 -
CM017701.1chromosomeCM017701.1:19802470..19802683 -
CM017688.1chromosomeCM017688.1:25538208..25538422 -
D01chromosomeD01:20260846..20261059 -
A01chromosomeA01:26648651..26648859 -
Chr01chromosomeChr01:27195023..27195237 -
Chr01chromosomeChr01:46923392..46923606 +
B_01chromosomeB_01:26690530..26690738 -
Chr02chromosomeChr02:19640260..19640462 -
chr02chromosomechr02:16965115..16965903 -
Chr_02chromosomeChr_02:14486512..14486726 -
Chr02chromosomeChr02:19186581..19186801 -
Chr02chromosomeChr02:17404691..17404899 -
Chr02chromosomeChr02:12515528..12515726 -
Chr02chromosomeChr02:15826593..15826813 -
E01chromosomeE01:29990430..29990638 -
F01chromosomeF01:22606549..22606756 -
Chr01chromosomeChr01:149288480..149288682 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A47.6NAU1363View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A88.2NAU1363View
Sequence
>NAU1363 ID=NAU1363; Name=NAU1363; organism=Gossypium arboreum; type=genetic_marker; length=215bp
TTACGATCTGCTGAAATCCATTTGATCCATCTCTTCTCGGAAAGAAAGTT
TAAAGAACATGGTGCGATGAAGCAGTGGGAGAAAGAGATAGGAGATGGCT
AGAGAAGGCAGAGGAGCCAAATGGGGTGGTCATGGTTTGGGTTCAGGTTC
AGGTTCAGGTTCGGGTCAGTGCTCCTATAAAAGGATCACTGTGATTGTTT
GCTCCGTTAACATTG