NAU1278, NAU1278 (genetic_marker) Gossypium arboreum

Marker Overview


Name	NAU1278
Genbank ID	BE052577
Type	SSR
Species	Gossypium arboreum
Germplasm	AKA 8400 AKA 8400
Source Type	EST
Repeat Motif	(TGT)6
PCR Condition	Annealing temperature: 57
Primer 1	NAU1278_F: ATCATGGAACCTGGTTGTTC
Primer 2	NAU1278_R: ATGAATTGCGGAGTCTAAGG
Product Length	219
Restriction Enzyme	EcoRI; XhoI
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BE052577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A12	chromosome	A12:75839809..75840039 -
CM018213.1	chromosome	CM018213.1:72899651..72899875 -
Chr12_CRI-A2_v1.0.a1	chromosome	Chr12_CRI-A2_v1.0.a1:28413141..28413359 +
CM016625.1	chromosome	CM016625.1:102673153..102673334 -
A12	chromosome	A12:61961237..61961467 -
Ghir_D12	chromosome	Ghir_D12:41606758..41606934 -
Ghir_A12	chromosome	Ghir_A12:80635067..80635297 -
A12	chromosome	A12:81777697..81777927 -
A12	chromosome	A12:78726957..78727187 -
A12	chromosome	A12:75883484..75883714 -
scaffold4	supercontig	scaffold4:656221..656397 +
scaffold2594	supercontig	scaffold2594:10738..10962 +
Gbar_D12	chromosome	Gbar_D12:38413527..38413703 -
Gbar_A12	chromosome	Gbar_A12:75321589..75321813 -
A12	chromosome	A12:75007682..75007906 -
CM017621.1	chromosome	CM017621.1:76485236..76485460 -
CM017647.1	chromosome	CM017647.1:79251111..79251338 -
CM017699.1	chromosome	CM017699.1:75338544..75338768 -
A12	chromosome	A12:82022969..82023199 -
Chr12	chromosome	Chr12:81612737..81612955 -
Chr12	chromosome	Chr12:88871521..88871739 -
Chr08	chromosome	Chr08:25311443..25311630 -
F12	chromosome	F12:66763128..66763309 -
Chr12	chromosome	Chr12:32959264..32959446 +

Germplasm


Stock Name	Type
AKA 8400	accession
AKA 8400	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch12_At.12	N/A	144.5	NAU1278	View
2	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch12_At.12	N/A	92.73	NAU1278	View
3	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch12_At.12	N/A	46.83	NAU1278	View
4	AD-genome wide Reference Map (2009)	AD_ch12_At.12	N/A	137	NAU1278	View
5	TM-1 x 3-79, RIL (2012)	AD_ch12_At.12	N/A	66.79	NAU1278	View
6	TM-1 x Hai-1, F2 (2007 Gl2)	AD_ch12_At.12	N/A	139.24	NAU1278	View
7	TM-1 x 3-79, RIL (2014)	AD_ch12_At.12	N/A	66.8	NAU1278	View
8	(86-1 x G. anomalum) x Su8289, BC2F1 (2015)	ABD_Bh.12	N/A	96.1	NAU1278	View
9	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch12_At.12	N/A	62	NAU1278	View
10	JLZM x ZJXSLS, F2 (2008)	A_JZ_A09	N/A	62.4	NAU1278-b	View
11	JLZM x ZJXSLS, F2 (2008)	A_JZ_A12	N/A	93.6	NAU1278-a	View
12	TM-1 x Hai-7124, BC1 (2007)	AD_ch12_At.12	N/A	32	NAU1278-270	View
13	TM-1 x Hai-7124, BC1 (2008)	AD_ch12_At.12	N/A	69.05	NAU1278-270	View
14	TM-1 x Hai-7124, BC1 (2012)	AD_ch12_At.12	N/A	68.6	NAU1278-270	View
15	TM-1 x 3-79, RIL (2012.v3)	AD_ch12_At.12	N/A	66.79	NAU1278	View

Sequence

>NAU1278 ID=NAU1278; Name=NAU1278; organism=Gossypium arboreum; type=genetic_marker; length=219bp
ATCATGGAACCTGGTTGTTCGTATGTATGCTTGTTAAAGCTGCTGTTGTT
GTTGTTGTTGTAATGTTCGTGACAGTCTATAACTGATTGCTATTAATAAT
GTCTTAGAATGTCGTTTTCGATCTATTTTCTATTGTTTGAGTATGTCGGT
TTCGATCTATTGTCTATTGTTTGAGATACTTGCATTTCAATTTGCATAGC
CTTAGACTCCGCAATTCAT

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NAU1278, NAU1278 (genetic_marker) Gossypium arboreum