NAU0997, NAU0997 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0997
AliasNAU997
Genbank IDBQ406381
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TC)9
PCR ConditionAnnealing temperature: 57
Primer 1NAU997_F: TATGAACCAAAAGCCCTGAC
Primer 2NAU997_R: GTGTGTTTTTGGGATGTGAA
Product Length239
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ406381
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:101151194..101151430 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:99140752..99141002 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:128304652..128304889 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr5chromosomeDt_chr5:14259435..14259665 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:47920171..47920407 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:93482470..93482706 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:105816604..105816838 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:104742727..104742963 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:102893509..102893743 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:62231579..62231809 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:98157482..98157718 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold47345supercontigscaffold47345:46917..47167 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:98301864..98302112 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:100667086..100667336 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:64001610..64001840 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:99922259..99922496 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:65635627..65635857 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:107069543..107069779 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:101065824..101066070 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:106497800..106498036 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:7189894..7190124 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:7117303..7117541 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:61851321..61851561 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:41186007..41186247 -Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:103914751..103914995 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Zhongmiansuo-12 x 8891, RIL (2007)AD_ch03_At.03N/A0NAU997View
2PD6992 x SM3, F2:3 (2005)AD_ch03_At.03N/A17.3NAU997View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch03_At.03N/A98NAU997View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A76.9NAU997View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A101.3NAU997View
6Yumian-1 x T586, RIL (2006)AD_ch14_Dt.02N/A62.6NAU0997View
7Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A113.1NAU0997View
8Yumian-1 x T586, RIL (2009)AD_ch14_Dt.02N/A30.1NAU0997/200yView
Sequence
>NAU0997 ID=NAU0997; Name=NAU0997; organism=Gossypium arboreum; type=genetic_marker; length=239bp
TATGAACCAAAAGCCCTGACCCCGAAATCCAAAGCCGAAGTCTCTCTCTC
TCTCTCTCACACACGCACTCACTCCGTCTCTCATGTCATGTCATGTCATG
CAAGTAGCACCTAAGCTTTTAAGTTTTTAACCCCTCTCTGCGCTCTCTCT
CTCTCTCTCTCTCACACACACTCCCTTCACCCCACGACATTTGTTTAATT
GTGTCACTTGGCCAGCTCATTCACATCCCAAAAACACAC