MUSS0547, MUSS0547 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0547
AliasMUSS547
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifGAT(4)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS547_F: AAGACAGATGCAAAAACGGC
Primer 2MUSS547_R: CTCTGCATCTTCATCCTCGG
Product Length171
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:64065638..64065808 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:26144528..26144704 +Gossypium australe (G2) genome CRI_v1.1n/a
At09chromosomeAt09:58348447..58348617 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8287supercontigscaffold8287:115115..115223 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10874supercontigscaffold10874:83928..84098 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:58079581..58079751 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:59504718..59504888 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:59117430..59117600 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:62098757..62098927 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:59395914..59396084 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr09chromosomeChr09:63553885..63554055 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:66733186..66733356 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:35925286..35925462 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E09chromosomeE09:22657309..22657485 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:106027155..106027328 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A80.62MUSS547View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch09_At.09N/A54.14MUSS547View
3TM-1 x 3-79, RIL (2006)AD_ch09_At.09N/A45.4MUSS547View
4TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A83.68MUSS547View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch09_At.09N/A40.06MUSS547View
6TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A55.1MUSS547View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A81.3MUSS547View
8AD-genome wide Reference Map (2009)AD_ch09_At.09N/A102muss0547View
9TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A55.13MUSS547View
Sequence
>MUSS0547 ID=MUSS0547; Name=MUSS0547; organism=Gossypium arboreum; type=genetic_marker; length=171bp
AAGACAGATGCAAAAACGGCTAATGCTGGGAAACCTGATGCTGTAAAACA
AGCTGTCAAGATAACTGAACCAAGTGATAACAAGAAAAATGAGGACGATG
ATGATGATAGTGATTCCGAGGATGGAAGTGGTTCTGATGATGAAGATGAT
TCCGAGGATGAAGATGCAGAG