MUSS0185, MUSS0185 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0185
AliasMUSS185
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTA(9)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS185_F: AATTGATGAAACAGCCTCGG
Primer 2MUSS185_R: TACTGTGGCGTTACTGCTCG
Product Length248
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:346355..346595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:340379..340628 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:321799..322048 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:129119353..129119600 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:63564525..63564763 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:564389..564628 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold413.1supercontigscaffold413.1:813720..813960 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26.1supercontigscaffold26.1:3063882..3064131 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:294437..294677 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:322126..322375 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:347700..347948 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:588866..589105 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:357597..357837 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:316186..316435 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:375785..376025 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:375979..376219 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:354847..355096 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3201supercontigscaffold3201:403794..404043 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19499supercontigscaffold19499:27878..28127 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:404140..404389 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:377932..378181 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:352269..352509 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:366881..367130 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:397049..397296 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:379651..379900 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:324387..324627 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:334388..334637 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:414725..414974 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:391429..391676 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:95684689..95684930 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_11chromosomeChr_11:273180..273418 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:325841..326081 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:283209..283448 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:318715..318957 +Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:339299..339552 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:169316135..169316381 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeMUSS0185:10..387 .
Chr11:342123..342485 +		n/a
Chr11chromosomeMUSS0185:10..387 .
Chr11:344057..344419 +		n/a
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A12N/A39.4MUSS185View
Sequence
>MUSS0185 ID=MUSS0185; Name=MUSS0185; organism=Gossypium arboreum; type=genetic_marker; length=248bp
AATTGATGAAACAGCCTCGGGCCGATACCCATCTCCTAGTTAAAAATTTC
TCTAAATTTCTTTTGATACCGAAAATTTTATATATATAGATATATATTAT
TGAATTTTCCATCGCAATTTTTGCTTTGTCAATCTCTGCTTTTTCTTGGG
GAAAAGTAAAGAAGTGAGTACAAATGCTTGGTGGGTTGTATGGAGATCTA
CCGCCGCCGTCCGATGAGGATAACCAACCGAGCAGTAACGCCACAGTA