MUSS0013, MUSS0013 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0013
AliasMUSS013
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifAAAAG(4)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS013_F: GAGTAATTCCTAGTGCTTGCCTTG
Primer 2MUSS013_R: CACCTTACATGACACTTAGAATCCC
Product Length164
PolymorphismP_ MUSS0013
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A07chromosomeA07:766046..766204 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018208.1chromosomeCM018208.1:1041824..1041979 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:821796..821955 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold477.1supercontigscaffold477.1:173478..173636 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A07chromosomeA07:741279..741437 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A07chromosomeGhir_A07:754303..754461 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A07chromosomeA07:737391..737549 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:758179..758337 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:758805..758963 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold14544supercontigscaffold14544:18600..18755 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A07chromosomeGbar_A07:501103..501258 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A07chromosomeA07:453599..453754 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017616.1chromosomeCM017616.1:687474..687629 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017642.1chromosomeCM017642.1:747483..747641 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017694.1chromosomeCM017694.1:816646..816803 +Gossypium darwinii (AD5) genome HGS_v1.1
A07chromosomeA07:785052..785210 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:508980..509136 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:541656..541815 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A6.55MUSS013View
2TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A133.7MUSS013View
3TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A133.67MUSS013View
Sequence
>MUSS0013 ID=MUSS0013; Name=MUSS0013; organism=Gossypium arboreum; type=genetic_marker; length=164bp
GAGTAATTCCTAGTGCTTGCCTTGCACGGTTTGATTGCAAAAAGAAAAGA
AAAGAAAAGAAAAAAAAACCAGAGTGTGAAAGTGCAAAAATAAAAAAATC
CCTTTAACAAAGCACTCCTTTGAAACTCGGTGGGTAAAGGGGATTCTAAG
TGTCATGTAAGGTG