MUSB1268, MUSB1268 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1268
Genbank IDDX525150
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX525150
Source TypeEST
Repeat Motif(AGA)4
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1268_F: GAGATTGCAGGTCCTAGGTGTG
Primer 2MUSB1268_R: AGTGCTTCCTTGATTGCGACTAGA
Product Length263
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1268
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX525150
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:70445346..70445608 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:68040545..68040807 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:33584243..33584505 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:4501493..4501755 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:57325522..57325784 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:75595234..75595496 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:76869048..76869310 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:73845943..73846205 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:70740910..70741172 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:59995571..59995833 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8654supercontigscaffold8654:52612..52874 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:70391709..70391971 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:70222053..70222315 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:71561818..71562080 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:74377488..74377750 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:70395267..70395529 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:76791964..76792226 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:16993139..16993401 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:83550901..83551163 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX525150DX525150Gossypium hirsutumsequence_feature


Sequence
>MUSB1268 ID=MUSB1268; Name=MUSB1268; organism=Gossypium hirsutum; type=genetic_marker; length=263bp
GAGATTGCAGGTCCTAGGTGTGCCTTACAAATTGGATCCCAATTACCGAT
ATCCATTTCAGCCCAAATAAAATGGCCCAACCATTCCATGTAAAGCATAA
AGAGATAGGGCAATAGAGGACATCCTTGATGGATTCCTCTAACTGGTTTA
AACTTCTGAGTAGGCACGTCATTCCAAAGAATTTGCATAGAAGAAGAAGA
TATAGCTGACATAATCACATTTCATAAAAAGACAAGGATTCTAGTCGCAA
TCAAGGAAGCACT