MUSB0959, MUSB0959 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0959
Genbank IDDX530612
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX530612
Source TypeEST
Repeat Motif(AT)7
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0959_F: CGGATGCATAGAGAGGATCCTGC
Primer 2MUSB0959_R: CCTTACACACATACACATTGGCAGC
Product Length337
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0959
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX530612
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:10167800..10168136 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:87329057..87329389 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:9333496..9333830 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:91041337..91041669 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:41674944..41675282 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:85860014..85860368 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:15423968..15424314 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold71.1supercontigscaffold71.1:1276391..1276727 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:99267265..99267597 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:9325606..9325942 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:79868180..79868512 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9952046..9952382 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:97208670..97209002 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:9706690..9707026 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:98677952..98678284 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9852067..9852403 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:97139970..97140302 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:9264810..9265146 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:95212574..95212906 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:10193080..10193414 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:80337921..80338253 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27206supercontigscaffold27206:91481..91815 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18661supercontigscaffold18661:68810..69142 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:9402825..9403159 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:91024815..91025147 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:9371618..9371952 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:96085583..96085915 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:9484407..9484743 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:92927116..92927452 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:9762847..9763179 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:101472472..101472810 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:9412654..9412988 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:93873649..93873981 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:10323354..10323690 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:98733053..98733385 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:12659311..12659651 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:12589001..12589355 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:41423599..41423937 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:73025130..73025482 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:9644704..9644997 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:6639457..6639786 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:9592200..9592572 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:8738481..8738817 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:6195227..6195788 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12_6336890chromosomeChr12_6336890:5293..5762 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:15857044..15857386 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:10827980..10828332 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeMUSB0959:1..432 .
Chr12:9157480..9158160 +		n/a
Chr2chromosomeMUSB0959:1..432 .
Chr2:38693483..38694163 +		n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX530612DX530612Gossypium hirsutumsequence_feature


Sequence
>MUSB0959 ID=MUSB0959; Name=MUSB0959; organism=Gossypium hirsutum; type=genetic_marker; length=337bp
CGGATGCATAGAGAGGATCCTGCTAATGAATGGAAACACATTAACTATGA
ATATATATATATATAAAGGAAGGAACAATTCCAATGGTAAAAGTGGACAA
CAAGAAAGGTTAGAATGGTGAGACTATAGTAATGTGAGGCGATACTACTA
TGAAGAATATGGGACATTCAATCTCATTGTCCATAGATGTGAGAAGATTT
GAAGAGTTTAAAAATGTTAAAAAGGACTGTGATGAACCAATAATGATGCT
GATGTACTTTATATAGAAGTAATGATTTAGTGGAAATTTATTTTAAATTT
GTGGTAGATTTTGCTGCCAATGTGTATGTGTGTAAGG