MUSB0928, MUSB0928 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0928
Genbank IDDX822994
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822994.2
Source TypeEST
Repeat Motif(CGGCC)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0928_F: GTGGTAAGCGTGTTTGCGTG
Primer 2MUSB0928_R: CCATATTTCGGACTGGCCGTC
Product Length250
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0928
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822994
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:16556937..16557181 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:15876758..15877007 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr1chromosomeDt_chr1:47903174..47903423 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold59360supercontigscaffold59360:456..700 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:16324638..16324920 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:15664333..15664577 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:16294879..16295128 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:15864213..15864457 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold11685supercontigscaffold11685:43442..43691 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:16317705..16317954 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:15952005..15952254 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:16285553..16285836 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:16523783..16524066 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:16242548..16242797 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:16522155..16522399 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822994.2DX822994.2Gossypium hirsutumsequence_feature


Sequence
>MUSB0928 ID=MUSB0928; Name=MUSB0928; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
GTGGTAAGCGTGTTTGCGTGGGATATTGATATGTATAAGGTCAAGTTGCT
TCCCGTTTATCTTGTTCTTCAGGCTCCGATTATATTATATAAAAGATGGC
TTTGAATCGTGTGTATTTGCACTTTGGAAATTGGAATTGGAATTTGTTGT
TTGATGCAAGTGTTTAGAAAATAAAACATTTTTGTTTGGATATAGAACTG
TCCATGGGTCGGGCGGCCCGGCCCGGCCCGACGGCCAGTCCGAAATATGG