MUSB0857, MUSB0857 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0857
Genbank IDDX521818
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX521818
Source TypeEST
Repeat Motif(ACA)4
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0857_F: GACCACTTCTCGGCTCTAAGC
Primer 2MUSB0857_R: TGAGCATCGAGCGTATGTCGA
Product Length140
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0857
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX521818
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:56702448..56702586 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:51530040..51530178 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:49628746..49628884 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D06chromosomeD06:52952589..52952727 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:55191468..55191606 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:54371463..54371601 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:54404709..54404847 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:51676026..51676164 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4854supercontigscaffold4854:31602..31740 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:51705354..51705492 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:51913403..51913541 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:52308174..52308312 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:55176710..55176848 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:52229927..52230065 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:55116895..55117033 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:49395070..49395208 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:51741984..51742122 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:33860207..33860345 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:29010318..29010456 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX521818DX521818Gossypium hirsutumsequence_feature


Sequence
>MUSB0857 ID=MUSB0857; Name=MUSB0857; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
GACCACTTCTCGGCTCTAAGCGTAGAAACCACATTGGGAAAGTAACTCGA
ACCGGCTTTACAACAACAACAATCTCGGAGCCATCAACACAACACAAAGT
CACCAAATTTTCCCTACAATCGACATACGCTCGATGCTCA