MUSB0801, MUSB0801 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0801
Genbank IDDX558300
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX558300
Source TypeEST
Repeat Motif(CTTA)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0801_F: CCCTTTCTCAAGTATCTCTGAGCGA
Primer 2MUSB0801_R: GCTAGGGCTCCTGCTAGAGC
Product Length492
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0801
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX558300
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:21414021..21414512 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:50888886..50889376 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:19395132..19395623 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:85415795..85416286 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:32304058..32304548 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:96770897..96771387 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:51799362..51799853 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:19544732..19545223 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:47561574..47562064 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:78860783..78861273 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:19804207..19804698 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:79065275..79065765 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:19146946..19147437 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:76915241..76915731 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:19776454..19776945 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:75689979..75690469 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:19771691..19772182 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9342supercontigscaffold9342:4280..4771 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:19447606..19448097 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:19194725..19195216 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:75829052..75829542 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:19296160..19296651 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:19951667..19952158 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:19276080..19276571 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:78656732..78657222 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:19918675..19919166 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:19503465..19503956 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:69446152..69446642 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX558300DX558300Gossypium hirsutumsequence_feature


Sequence
>MUSB0801 ID=MUSB0801; Name=MUSB0801; organism=Gossypium hirsutum; type=genetic_marker; length=492bp
CCCTTTCTCAAGTATCTCTGAGCGATCATCTCCTATATATCATTGACGAC
TTATCTGCATCATCTGATTCACCTTGAAGAATTTCACCNGTTTTCACATT
TCAATTCCATAACTTTTTGTCTACAATTCACTATAGCCTCATGTAGTGTC
AACCAATCCATACCCAGTATGACATCAAATTTGTCAAATGGCAACAACAT
TAATTCGGCCGGAAAACAATGATCTTTAACCATCAAAGGACATTTCTTAC
TTACTTAATCAACTATCACATGTTTTCCTAATGGGTTAGAGTCCTTAATT
ACAAATTCTGTAGACTTAATAGGTATATTCATACTAGATGCCAATTTCAT
ACACACATACAAATAAGTGTTAGCCAGGGTCTATCAAAGCAATAACATTA
GTATCATAGAGAGAAAATTTACCAGTGATCACATCAGGAGAAGTTGCATC
TTCGCGTGCACATATGACATAGGCTCTAGCAGGAGCCCTAGC