MUSB0761, MUSB0761 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0761
Genbank IDDX823046
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823046
Source TypeEST
Repeat Motif(AAG)4
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0761_F: ACCGGAATCAAATACTTGCAC
Primer 2MUSB0761_R: CGCTTTCTGGAAACCTAAAAC
Product Length175
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0761
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823046
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:950212..950386 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:714758..714931 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:781953..782127 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:1117386..1117547 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold944.1supercontigscaffold944.1:291066..291240 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:860863..861037 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:893375..893549 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:855547..855721 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:910717..910891 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:888887..889061 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold35927supercontigscaffold35927:35073..35246 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:689268..689441 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:789264..789437 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:840975..841148 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:742648..742822 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:827443..827616 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:914612..914786 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:700663..700837 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:714830..715004 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:811982..812146 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:664014..664181 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:725454..725621 +Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:722144..722323 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:199072846..199073022 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823046DX823046Gossypium hirsutumsequence_feature


Sequence
>MUSB0761 ID=MUSB0761; Name=MUSB0761; organism=Gossypium hirsutum; type=genetic_marker; length=175bp
ACCGGAATCAAATACTTGCACTCGAGTTCGAGTATCGTAACCGGTAGAAA
TGGCTTACCAACAAAAAGATGAGGACTAATTTGCAAAAAAAAAAGAAGAA
GAAGAATTCCATGGTTGCTTCAAATGTATAATAAGAAAGGTTTATTTATT
AATGGTTTTAGGTTTCCAGAAAGCG