MUSB0731, MUSB0731 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0731
Genbank IDDX823016
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823016.2
Source TypeEST
Repeat Motif(AAAG)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0731_F: CAGGGTTAACTTGTGCGATTC
Primer 2MUSB0731_R: GTCCTTTTTGGGCAAAGATTG
Product Length191
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0731
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823016
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:45848986..45849176 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:42212457..42212647 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:41054272..41054462 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D13chromosomeD13:41701570..41701760 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:45101742..45101932 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:46358532..46358722 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:45239915..45240105 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:42163783..42163973 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:43701264..43701454 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17073supercontigscaffold17073:14454..14644 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:41938166..41938356 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:43339877..43340067 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:43121787..43121977 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:45986624..45986814 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:43259198..43259388 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:46242599..46242789 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:41096527..41096718 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823016.2DX823016.2Gossypium hirsutumsequence_feature


Sequence
>MUSB0731 ID=MUSB0731; Name=MUSB0731; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
CAGGGTTAACTTGTGCGATTCAAATCAAAAGAAAGAAAGGCAGCGTTATT
ATCAATGTCCCCTCATCTACCTACTTTTGCTTGGTTACAAATTAAATGTT
ATGTAGAAGCATTTCATTTTTTTAGATTCATAGATCATTATGAAATTGAA
AACATAACATTTCTATTAATCAATCTTTGCCCAAAAAGGAC