MUSB0727, MUSB0727 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0727
Genbank IDDX823012
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX823012
Source TypeEST
Repeat Motif(ATAA)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0727_F: TGAAGAAGAAGTGGTAGTGGAACT
Primer 2MUSB0727_R: GTGAAGACTGGGCGAGTAGAA
Product Length268
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0727
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX823012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:8353920..8354187 -
A06chromosomeA06:9798416..9798670 -
CM018220.1chromosomeCM018220.1:7513385..7513652 -
CM018207.1chromosomeCM018207.1:9830444..9830698 -
D5_06chromosomeD5_06:7630092..7630359 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:8118758..8119012 -
D10_06chromosomeD10_06:52532446..52532713 +
CM016619.1chromosomeCM016619.1:134542735..134542996 +
Dt_chr10chromosomeDt_chr10:23292492..23292759 +
At_chr10chromosomeAt_chr10:69295416..69295670 -
D06chromosomeD06:7427756..7428023 -
A06chromosomeA06:8491382..8491636 -
Ghir_D06chromosomeGhir_D06:8207745..8208012 -
Ghir_A06chromosomeGhir_A06:9975512..9975766 -
D06chromosomeD06:7924000..7924267 -
A06chromosomeA06:9481372..9481626 -
D06chromosomeD06:8176038..8176305 -
A06chromosomeA06:9889200..9889454 -
D06chromosomeD06:7657479..7657746 -
A06chromosomeA06:9838989..9839243 -
scaffold294supercontigscaffold294:162669..162923 +
scaffold294supercontigscaffold294:159690..159944 +
scaffold13658supercontigscaffold13658:125061..125328 +
scaffold13658supercontigscaffold13658:120532..120799 +
Gbar_D06chromosomeGbar_D06:7635393..7635660 -
Gbar_A06chromosomeGbar_A06:9575431..9575685 -
D06chromosomeD06:7557925..7558192 -
A06chromosomeA06:9654769..9655023 -
CM017628.1chromosomeCM017628.1:8135810..8136077 -
CM017615.1chromosomeCM017615.1:9906182..9906436 -
CM017654.1chromosomeCM017654.1:7737489..7737757 -
CM017641.1chromosomeCM017641.1:9752588..9752842 -
CM017706.1chromosomeCM017706.1:7704886..7705153 -
CM017693.1chromosomeCM017693.1:9971351..9971605 -
D06chromosomeD06:8396205..8396472 +
A06chromosomeA06:9949759..9950013 -
Chr06chromosomeChr06:9800219..9800473 -
Chr06chromosomeChr06:9956104..9956358 -
Chr06chromosomeChr06:7419376..7419643 -
B_06chromosomeB_06:87755157..87755416 +
Chr10chromosomeChr10:7947797..7948064 -
Chr_10chromosomeChr_10:6321950..6322217 -
Chr10chromosomeChr10:8158165..8158432 -
Chr10chromosomeChr10:5741358..5741624 -
Chr10chromosomeChr10:6146215..6146482 -
E06chromosomeE06:106643671..106643933 +
F06chromosomeF06:8314947..8315203 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX823012DX823012Gossypium hirsutumsequence_feature


Sequence
>MUSB0727 ID=MUSB0727; Name=MUSB0727; organism=Gossypium hirsutum; type=genetic_marker; length=268bp
TGAAGAAGAAGTGGTAGTGGAACTAAATTTTCTTGTTGACTAAAAATCAT
AAAACTCCTAAACAACTTAAAATACTTAAAAATAACCTAAAATTCAGGAT
AAATAAATAATAAACATATAAAAACTAATAAATACAATATTGGAATCATT
TATAATCAAAATTAAGTCTTAAAATTTAACCTAATATGATTCAAACTCGA
ATTAAAGCTCGAAACTCGTAATTTCCCGTAATAATATCGTCCAATAATTC
TACTCGCCCAGTCTTCAC