MUSB0485, MUSB0485 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0485
Genbank IDDX822798
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822798
Source TypeEST
Repeat Motif(TAAT)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0485_F: CCGAGCCCTCAACATTTATC
Primer 2MUSB0485_R: GGGCGAGGTGTTCATTTATC
Product Length330
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0485
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822798
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:108163769..108164097 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:106330635..106330959 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3473709..3474033 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4174548..4174872 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:97290373..97290701 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111134636..111134964 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111603364..111603692 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111243620..111243948 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
scaffold19666supercontigscaffold19666:32102..32421 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16242supercontigscaffold16242:267819..268143 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:106608084..106608408 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:107993676..107994000 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:107278467..107278791 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:114998487..114998811 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109569414..109569738 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114419394..114419722 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124144328..124144651 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120085096..120085420 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58678431..58678755 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:60824831..60825151 -Gossypium thurberi (D1-5) genome CRI_v1n/a
F10chromosomeF10:91414097..91414421 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822798DX822798Gossypium hirsutumsequence_feature


Sequence
>MUSB0485 ID=MUSB0485; Name=MUSB0485; organism=Gossypium hirsutum; type=genetic_marker; length=330bp
CCGAGCCCTCAACATTTATCTTAACCCAACCAGTCATTAGAGGGTCCCAC
CTTTTCCTTGACATTAAATGAAAATGATCTTAATTACAATATTATTTCAA
TAAAATGATAAATTTCATGTGAAAAAAATTCTATTAATCATATTTTATCA
AATGAAAATAATCTTCAATGAGGGGATTTAAAGATATTAATTCAATAAAC
TATTAAGTTCCCTAATCAAATATTCTAACATGAATTTGGAACATCGTAAA
CTTATAAATTGATTACTTGAATTCAATAACTCATAATTAATTAATTAATT
AATTTAATTTGATAAATGAACACCTCGCCC