MUSB0471, MUSB0471 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0471
Genbank IDDX822785
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822785
Source TypeEST
Repeat Motif(CA)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0471_F: ACTCGTCGAATGGTCAGAGC
Primer 2MUSB0471_R: TCTCCCGATGTGATTACTGG
Product Length261
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0471
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822785
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:17107257..17107518 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D08chromosomeD08:46690565..46690826 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:43468731..43468992 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:26167522..26167783 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:28698471..28698732 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:26835125..26835386 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:32934264..32934525 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_09chromosomeD10_09:42909414..42909675 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_07chromosomeD10_07:36228074..36228335 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_07chromosomeD10_07:7431425..7431686 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_07chromosomeD10_07:49541500..49541754 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_05chromosomeD10_05:42947855..42948116 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_05chromosomeD10_05:31861665..31861926 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:52180587..52180843 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:33510396..33510657 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_12chromosomeD10_12:35508054..35508315 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_12chromosomeD10_12:30799866..30800120 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_12chromosomeD10_12:12952341..12952600 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:51660612..51660873 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:23004388..23004649 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_04chromosomeD10_04:26394919..26395180 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_04chromosomeD10_04:1786077..1786338 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:6652844..6653104 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:60023668..60023929 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:33571253..33571513 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:13686900..13687153 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:40517152..40517413 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:14069872..14070124 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:28660563..28660824 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr4chromosomeDt_chr4:11232673..11232934 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:16522692..16522953 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:43110348..43110609 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:45988230..45988491 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D12chromosomeGhir_D12:28241649..28241910 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:46965493..46965754 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:27616134..27616395 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:45859623..45859884 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:28287893..28288154 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:43142777..43143038 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:26232775..26233036 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2365supercontigscaffold2365:158197..158458 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4222supercontigscaffold4222:127235..127496 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4222supercontigscaffold4222:123944..124205 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:17126449..17126710 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D08chromosomeGbar_D08:43407012..43407273 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:45499193..45499454 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:26721514..26721775 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:17120150..17120411 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017630.1chromosomeCM017630.1:44942915..44943176 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:46595293..46595554 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:27483697..27483958 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:44055100..44055361 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:27269377..27269638 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:46459319..46459580 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:28202603..28202864 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:29309677..29309938 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:21171183..21171445 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:37095333..37095593 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:17096653..17096914 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:28192886..28193145 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:56845616..56845874 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:28267580..28267838 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:41058921..41059181 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:38552289..38552543 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:34760788..34761045 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:31691759..31692015 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:23077813..23078073 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:9390060..9390320 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:55807704..55807961 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:12347010..12347270 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:45600475..45600733 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:29356083..29356340 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:17139147..17139408 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:27823836..27824096 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:40529206..40529468 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:30740886..30741147 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:35714928..35715186 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:54457091..54457352 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:30738330..30738591 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:41053007..41053268 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:31301324..31301585 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:13439222..13439483 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:17234051..17234314 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822785DX822785Gossypium hirsutumsequence_feature


Sequence
>MUSB0471 ID=MUSB0471; Name=MUSB0471; organism=Gossypium hirsutum; type=genetic_marker; length=261bp
ACTCGTCGAATGGTCAGAGCATCAGATTAGCCGGGAAACAGTAACCTTGA
ATTGTCAAAGGACAATTCTTGCAAACCTTATCAACTAAAACATATTTGCC
TAAAGGGTTTGATACTTTTACCACAAATTCAGTGTTTTTTTATGCAAATT
TTTATTAGACACTAAATTCACACACACATATGAATGAGTAGACCCAGGGT
CAATCAAAGCAACAACATCAATATCATAAAGAGAGAATGTACCAGTAATC
ACATCGGGAGA