MUSB0423, MUSB0423 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0423
Genbank IDDX822742
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822742
Source TypeEST
Repeat Motif(ATTC)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0423_F: CATCTCCATGTACCTGAATCG
Primer 2MUSB0423_R: TGTAAGAACCACGTTGGGAAC
Product Length143
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0423
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822742
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:25741206..25741347 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:25272867..25273008 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr11chromosomeAt_chr11:41786084..41786225 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2477_A10supercontigscaffold2477_A10:141881..142022 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:25603780..25603921 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:25105441..25105582 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:25216751..25216892 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:26069761..26069902 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7117supercontigscaffold7117:84521..84662 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:25522334..25522475 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:25391596..25391737 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:24873404..24873545 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:26490243..26490384 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:25633706..25633847 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:26251645..26251786 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:95009588..95009729 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822742DX822742Gossypium hirsutumsequence_feature


Sequence
>MUSB0423 ID=MUSB0423; Name=MUSB0423; organism=Gossypium hirsutum; type=genetic_marker; length=143bp
CATCTCCATGTACCTGAATCGGTTATTCATTCATTCAATCACGTATTTCT
CAAAATGCTCGTTGAACTGTACGGTATTAAATAAGATATGCTTTTAGCTC
AGAAAGGTCGTACAATGCCAACGTTCCCAACGTGGTTCTTACA