MUSB0364, MUSB0364 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0364
Genbank IDDX822692
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822692
Source TypeEST
Repeat Motif(AATC)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0364_F: TGCTGGCACTCTATCCAATG
Primer 2MUSB0364_R: GCACGGTTCACATTCATTTC
Product Length320
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0364
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822692
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:46347525..46347843 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:49501544..49501862 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:59979494..59979812 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:76737417..76737735 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:40480306..40480624 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:50402448..50402766 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:53029849..53030167 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:51543562..51543880 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:48221922..48222240 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:42288783..42289101 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11368supercontigscaffold11368:44047..44365 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:50322516..50322834 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:51330799..51331117 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:49633944..49634262 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:53525537..53525854 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:52257682..52258000 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:53723979..53724297 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:66186941..66187259 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:65091828..65092146 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822692DX822692Gossypium hirsutumsequence_feature


Sequence
>MUSB0364 ID=MUSB0364; Name=MUSB0364; organism=Gossypium hirsutum; type=genetic_marker; length=320bp
TGCTGGCACTCTATCCAATGTCGCAACATGTTTTTCCAACCTCGAGCTCT
TATTCTTTTGTATAGTATCTGACAGACTTATTAAGTATGTTAACCCACCT
TTAGGCCTCATTCAACCTCTAAGGTCATAAAATGATCATACAATAGTCCA
ATTGGCACTCTTACCTAATCTAAATGGCATGCTTCTAATATATGCATGGC
ATGCTATGGCAATTTTATAATATCCATTCACAAGAATCAATCAATCTTAA
AATAAACAATTTTGATTCTCCACAATTTTTCTTTTAAGGGAAAAACCAAA
GAAATGAATGTGAACCGTGC