MUSB0327, MUSB0327 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0327
Genbank IDDX822653
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822653
Source TypeEST
Repeat Motif(TGTT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0327_F: GCCTTCCCATCAAAACACAG
Primer 2MUSB0327_R: CTCAAGGTGTAAGGTACAACAATCA
Product Length428
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0327
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822653
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:3377202..3377629 -
CM018223.1chromosomeCM018223.1:3309166..3309594 -
D5_09chromosomeD5_09:3542091..3542518 -
D09chromosomeD09:3442166..3442593 -
Ghir_D09chromosomeGhir_D09:3478243..3478667 -
D09chromosomeD09:3421412..3421839 -
D09chromosomeD09:3397184..3397611 -
D09chromosomeD09:3193475..3193902 -
scaffold1346supercontigscaffold1346:40894..41321 +
Gbar_D09chromosomeGbar_D09:3278393..3278821 -
scaffold44350_objsupercontigscaffold44350_obj:623..1050 -
CM017631.1chromosomeCM017631.1:3486927..3487353 -
CM017657.1chromosomeCM017657.1:3346197..3346607 -
CM017709.1chromosomeCM017709.1:3407945..3408372 -
D09chromosomeD09:3568424..3568851 -
Chr06chromosomeMUSB0327:1..860 .
Chr06:3485126..3485986 -
scaffold290supercontigMUSB0327:1..860 .
scaffold290:239549..240409 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822653DX822653Gossypium hirsutumsequence_feature


Sequence
>MUSB0327 ID=MUSB0327; Name=MUSB0327; organism=Gossypium hirsutum; type=genetic_marker; length=428bp
GCCTTCCCATCAAAACACAGATTGCAATTGACACCAATTTTTGTTCTGAG
TTGTAACTAAAGAAATATTATTTGTTTTAAACCAACTAAATTGGAAATAA
GTAAAAAAAAGTATTTATTAATTTATTTAGTTTGCTTCTTCATTTTGTAT
AAAAATACTTAATTGGTAATTAATTTATTTTTTGGATCAAGTTGCTATTT
GAATTTGTATTTATCATCTAAGTTAATATATATTTATATTGGTGTTTGTT
TGTTATTATGTGAATATGAATTAAAAAATTAAACTAATAAAAAATAAAAA
AAATCATATTTAGATCATAGTGGATTGAAATGAAACAATTAGAAGAAAAG
CATACAAGTATGATCCACTAGTCATTTTTTTTATAATTATTTTACGAGTT
TTATGATTGTTGTACCTTACACCTTGAG