MUCS0615, MUCS0615 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0615
AliasMUCS615
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifAAT(4)A AAATA
PCR ConditionAnnealing temperature: 55
Primer 1MUCS615_F: CAGCAGCAAAGAAAAAGAACAG
Primer 2MUCS615_R: TCAAACCCTCTTTTGATACCG
Product Length274
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:96445561..96445831 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:98491846..98492116 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:94279149..94279422 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:58473027..58473297 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:88151229..88151499 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:105189681..105189951 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:106783547..106783817 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:105293389..105293659 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:103237659..103237929 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7809supercontigscaffold7809:113322..113592 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:98587727..98587997 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:103477996..103478266 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:100884348..100884618 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:109476743..109477016 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:101428800..101429070 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:107072313..107072583 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:4389681..4389954 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:4363818..4364091 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A06N/A216.7MUCS615View
Sequence
>MUCS0615 ID=MUCS0615; Name=MUCS0615; organism=Gossypium arboreum; type=genetic_marker; length=274bp
CAGCAGCAAAGAAAAAGAACAGAAAATGAAATTCTTTGTATTTTTTTCTT
TTTATTTTCAACTATATAAAAGCCTTATTTTCATTGTAAGAGAAGGTACG
CACATTGAATACAGATATCGAATACTAAAAAAAAGAGGCGATTTTGAAAG
AGAAATCGGATTCAAACCCCAAAGGTTGTTCCTTTTCTTTGCTTTTATGT
GTTCTTTCTGTCTTATTTTGAAGCAATAATAATAATAAATAGTAGTAAAA
AATCGGTATCAAAAGAGGGTTTGA