MUCS0542, MUCS0542 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0542
AliasMUCS542
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTA(7)TAG(2)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS542_F: AGGCCCGGATCTGAAAGC
Primer 2MUCS542_R: TCCTGTCCTGGAGAGTAGTGG
Product Length273
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:106616952..106617220 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:103958756..103959024 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_03chromosomeKI_03:40294451..40294715 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:133587945..133588247 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:2761562..2761816 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold190.1supercontigscaffold190.1:1320516..1320784 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:98231369..98231637 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:109562839..109563107 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:108008820..108009088 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:103284374..103284642 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5424supercontigscaffold5424:272525..272793 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:103137437..103137705 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:103171129..103171395 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:105539457..105539725 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:104879163..104879431 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:112008832..112009102 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:105981258..105981526 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:111580128..111580396 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:2014159..2014431 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:2118529..2118833 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:2241066..2241336 -Gossypium anomalum (B1) genome NSF_v1n/a
E03chromosomeE03:123508072..123508352 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:108297626..108297888 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:2318098..2318374 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A06N/A134.8MUCS542View
Sequence
>MUCS0542 ID=MUCS0542; Name=MUCS0542; organism=Gossypium arboreum; type=genetic_marker; length=273bp
AGGCCCGGATCTGAAAGCTCTTTCTTTCTCTCTCTGTTGAATATCTTTTT
CATTTTTTCAAAAAAATTCTCTATTTTCCATGTGTAAGCACTCAACAGAG
TCTTATGATTTGATCCAGTGATATATAAATATATATATATATAGTAGAAT
TAGATATATATACAGCGAAAAAAGCTCCAAAAAGCAAAATCATTATATGA
TCTGACAATTTCTGCCAAATGCCACGCCCTTTTTTCCATAAGCTTATTCT
CTCCACTACTCTCCAGGACAGGA