JESPR0253, JESPR0253 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0253
AliasJESPR253
Genbank IDAF351491
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351491.1
Source Typegenomic
Repeat Motif(GT)11
Primer 1JESPR0253_F: CAAACCACGTCTTCTCT
Primer 2JESPR0253_R: CTTAACATCGTCGAATTTTC
PolymorphismP_ JESPR0253
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351491
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D11chromosomeD11:3479207..3479301 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018225.1chromosomeCM018225.1:3278013..3278107 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_11chromosomeD5_11:62626188..62626276 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
CM016624.1chromosomeCM016624.1:4272216..4272306 -Gossypium australe (G2) genome CRI_v1.1
Dt_chr7chromosomeDt_chr7:6869688..6869782 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold123560supercontigscaffold123560:157..251 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D11chromosomeD11:3451079..3451173 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A11chromosomeA11:3249672..3249773 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D11chromosomeGhir_D11:3392799..3392893 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D11chromosomeD11:3321886..3321980 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D11chromosomeD11:3418029..3418123 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D11chromosomeD11:3359833..3359927 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold17829supercontigscaffold17829:331324..331416 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D11chromosomeGbar_D11:3331928..3332020 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D11chromosomeD11:3349787..3349881 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017633.1chromosomeCM017633.1:3278944..3279038 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017659.1chromosomeCM017659.1:3396396..3396490 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017711.1chromosomeCM017711.1:3309273..3309367 -Gossypium darwinii (AD5) genome HGS_v1.1
D11chromosomeD11:3392637..3392731 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr11chromosomeChr11:60108869..60108957 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_11chromosomeB_11:3644295..3644389 -Gossypium anomalum (B1) genome NSF_v1
Chr07chromosomeChr07:3158802..3158894 -Gossypium thurberi (D1-5) genome CRI_v1
Chr07chromosomeChr07:3364557..3364653 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr07chromosomeChr07:2541101..2541195 -Gossypium gossypioides (D6) genome ISU_v1
Chr07chromosomeChr07:2765594..2765684 -Gossypium lobatum (D7) genome ISU_v1
E11chromosomeE11:3932578..3932666 -Gossypium stocksii (E1) genome NSF_v1
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351491.1AF351491.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0253 ID=JESPR0253; Name=JESPR0253; organism=Gossypium hirsutum; type=genetic_marker; length=95bp
CAAACCACGTCTTCTCTTAATTCAATATGGTTTNGTGTGTGTGTGTGTGT
GTGTGTTTATGTTTNGGTTTGGATTGAAAATTCGACGATGTTAAG