HAU3179, HAU3179 (genetic_marker) gossypium spp

Marker Overview
NameHAU3179
Genbank IDGR712694
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TATG)4
PCR ConditionAnnealing temperature: 56.6
Primer 1HAU3179_F: CTGGGGTGAGGCCAGGGATA
Primer 2HAU3179_R: AGCACCCTCAGGATCTGAGTACA
Product Length320
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR715460
DB:genbankGR712694
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:8844042..8844694 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:8800007..8800659 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:103809073..103809725 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:7053259..7053911 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:7332300..7332952 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:9707114..9707766 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:9700354..9701009 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:9693627..9694281 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:9190097..9190749 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:9665617..9666269 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:9090554..9091206 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:9083795..9084449 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:7403870..7404522 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10963supercontigscaffold10963:13276..13928 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:8705455..8706107 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:8859929..8860581 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:9241945..9242597 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:9252272..9252924 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:9262593..9263245 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:9272925..9273577 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:9628816..9629468 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:9060836..9061488 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:9790168..9790820 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:8740432..8741084 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:109261766..109262418 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:9748039..9748682 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:23961167..23961819 +Gossypium aridum (D4) genome ISU_v1n/a
E02chromosomeE02:76827260..76827913 +Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:67880316..67880969 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU3179 ID=HAU3179; Name=HAU3179; organism=Gossypium spp.; type=genetic_marker; length=320bp
CTGGGGTGAGGCCAGGGATAAAATATGTGAATCTGTTGCAGATTTGAAGC
TTGATTGTTTGGTAATGGGCAGCAGAGGCCTTGGCACCATTCAAAGGGTA
CTGATTGGAAGTGTGAGCAACCATGTGATGGTAAATGCAACCTGTCCAGT
AACAATTGTTAAAGGATCCTAGTGCTCATGGATTTTGATCTCAGTATTCT
GCAAAAGTAATGTTCTTTGAAAATAATCGATGTTCCTTGTTTCTATTTCT
ATGTGGGTGATTTATGTATGTATGTATGGACATCTTGGTTCTGGGGTTGT
ACTCAGATCCTGAGGGTGCT