HAU2425, HAU2425 (genetic_marker) gossypium spp

Marker Overview
NameHAU2425
Genbank IDES792244
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGAAGA)4
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU2425_F: CCGGGAAACCCTACAACCCG
Primer 2HAU2425_R: AACGGGGCCGGTCAACATAC
Product Length232
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES822932
DB:genbankES792244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:6666362..6666575 +
A01chromosomeA01:8900413..8900644 +
CM018215.1chromosomeCM018215.1:6953550..6953760 +
CM018202.1chromosomeCM018202.1:8093393..8093618 +
D5_01chromosomeD5_01:6534240..6534452 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9176654..9176879 +
D10_01chromosomeD10_01:53754426..53754639 -
CM016614.1chromosomeCM016614.1:10121936..10122149 +
At_chr2chromosomeAt_chr2:8508449..8508680 +
At_chr2chromosomeAt_chr2:4842540..4842753 +
D01chromosomeD01:6219202..6219415 +
A01chromosomeA01:7769943..7770174 +
Ghir_D01chromosomeGhir_D01:7374976..7375189 +
Ghir_A01chromosomeGhir_A01:8088105..8088336 +
D01chromosomeD01:7205083..7205296 +
A01chromosomeA01:7778954..7779185 +
D01chromosomeD01:6806991..6807204 +
A01chromosomeA01:8243455..8243686 +
D01chromosomeD01:7243908..7244121 +
A01chromosomeA01:8056406..8056637 +
Dt01chromosomeDt01:5687136..5687346 +
Dt01chromosomeDt01:5684495..5684705 +
scaffold13018supercontigscaffold13018:161051..161261 +
scaffold13018supercontigscaffold13018:158410..158620 +
scaffold18264supercontigscaffold18264:50934..51159 -
scaffold18264supercontigscaffold18264:48982..49207 -
Gbar_D01chromosomeGbar_D01:7669843..7670053 +
Gbar_A01chromosomeGbar_A01:8121196..8121421 +
D01chromosomeD01:7406137..7406347 +
A01chromosomeA01:7789487..7789712 +
CM017623.1chromosomeCM017623.1:7139137..7139350 +
CM017610.1chromosomeCM017610.1:9106850..9107075 +
CM017649.1chromosomeCM017649.1:7957641..7957854 +
CM017636.1chromosomeCM017636.1:8232093..8232318 +
CM017701.1chromosomeCM017701.1:7303724..7303937 +
CM017688.1chromosomeCM017688.1:8283260..8283485 +
D01chromosomeD01:7493587..7493800 +
A01chromosomeA01:8252281..8252512 +
Chr01chromosomeChr01:8203617..8203842 +
Chr01chromosomeChr01:8985042..8985267 +
Chr01chromosomeChr01:6523377..6523590 +
B_01chromosomeB_01:8473808..8474021 +
Chr02chromosomeChr02:7065410..7065623 +
Chr_02chromosomeChr_02:6587316..6587529 +
Chr02chromosomeChr02:7226124..7226337 +
Chr02chromosomeChr02:8288659..8288872 +
Chr02chromosomeChr02:5599986..5600199 +
Chr02chromosomeChr02:7380365..7380578 +
E01chromosomeE01:9750327..9750546 +
F01chromosomeF01:7135224..7135443 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A64.53HAU2425cView
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A96.4HAU2425View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A114.6HAU2425View
4TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A79.3HAU2425-220View
5TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A87.3HAU2425-300View
Sequence
>HAU2425 ID=HAU2425; Name=HAU2425; organism=Gossypium spp.; type=genetic_marker; length=232bp
CCGGGAAACCCTACAACCCGGCAATGCCATTGATCTCGATGGTGAAGATT
ACGATGACGATGAAGACGATGCTATTGAAGAAGACGGTGAAGATGAAGAT
GAAGATGAAGACGAATACGAAGAAGACGAAGATGAAGATGAAAACGACGA
CGTCCTGTTTGAACCCGCCACTCCCCGCGCGGTGAAGCTGAAAATGGACA
CACTAGTCCGACGTATGTTGACCGGCCCCGTT