HAU1122, HAU1122 (genetic_marker) gossypium spp

Marker Overview
NameHAU1122
AliasTA27297_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGAT)4
PCR ConditionAnnealing temperature: 57.3
Primer 1HAU1122_F: GGCTAAAGCTGTTGTCCATT
Primer 2HAU1122_R: ATGGCCATACTTGAACCTTG
Product Length268
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:89611635..89611898 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:857255..857522 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:788884..789151 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:746580..746847 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:893012..893279 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:703147..703414 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:845066..845329 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:16952647..16952914 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:16932793..16933056 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1588.1supercontigscaffold1588.1:279601..279864 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:82620535..82620798 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:821869..822136 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:107266366..107266629 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:818133..818400 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:107470961..107471224 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:803954..804221 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:104923318..104923581 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:815914..816181 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:103504487..103504750 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:820419..820686 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:970715..970982 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15604supercontigscaffold15604:611609..611876 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:781547..781814 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:101331155..101331422 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:789407..789674 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:104308285..104308552 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:778166..778433 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:109062069..109062336 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:845565..845836 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:101481173..101481436 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:811191..811458 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:107410505..107410768 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:860674..860941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:92108387..92108654 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:101710193..101710460 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:756912..757179 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:73108549..73108810 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:762682..762949 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:814023..814286 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:653064..653344 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:766456..766723 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:592051..592318 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:795225..795492 -Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:552618..552885 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:728784..729051 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:138818524..138818791 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU1122 ID=HAU1122; Name=HAU1122; organism=Gossypium spp.; type=genetic_marker; length=268bp
GGCTAAAGCTGTTGTCCATTGTTGTAGTTGTTTAAGTGGGGTTATTGACC
CCTGTAAATTAGTGACACTATAAGATGGTTAAAGGTTTCGAAATTCTTGG
GGTCGGGTTCGGATCGGTAGGGTGAAATTTCTAGCCTGTGCCGCCGGGCT
TTTAACCGGATATGGGCACCGAAGAAAATGATCTTTGTTGGTGTGATTGA
TTGATTGATTTCTGTTTGAATGAGTGGGGGAAAGTTGAACTTCCTATACA
AGGTTCAAGTATGGCCAT