HAU1053, HAU1053 (genetic_marker) gossypium spp

Marker Overview
NameHAU1053
AliasTA24815_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TC)10
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU1053_F: CGATGAAGCTGCAAAACTAA
Primer 2HAU1053_R: TCATTGACACAGCAGTACCC
Product Length281
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:80085705..80085984 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:77082012..77082291 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:24032274..24032562 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3923.1supercontigscaffold3923.1:52266..52545 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:66185360..66185639 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:84788191..84788470 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:85810483..85810762 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:82882455..82882734 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:80029156..80029435 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8038supercontigscaffold8038:31021..31300 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:79518596..79518875 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:79052298..79052577 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:80628390..80628677 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:83583240..83583519 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:79444821..79445100 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:86199872..86200151 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:86114329..86114617 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:93333090..93333380 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:42082004..42082290 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:28641139..28641427 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:22579404..22579694 -Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>HAU1053 ID=HAU1053; Name=HAU1053; organism=Gossypium spp.; type=genetic_marker; length=281bp
CGATGAAGCTGCAAAACTAATGGTCGATTCTTCTTGTTTTTACACATCAT
TGGGTGATTGGGAGATTTGCCCTGGATCATACTAGCAATTGACTCACCTT
GTCTTCGTAATTATGATTCTGTTTTTGAGAATCATTAGTTAGTTTGCTGC
GTACCATTGAATTTATGGCTCTCAAGGGTGTGGGATTTATGTCTCTCTCT
CTCTCTCTCTTTCTGTTTCTGCCTTCGGTGTCAGTCTTTATGTCGATCAC
ATGATCTTAAAGGGTACTGCTGTGTCAATGA