HAU1047, HAU1047 (genetic_marker) gossypium spp

Marker Overview
NameHAU1047
AliasTA24699_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CAC)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1047_F: CACAAACAAATCCAATTCCA
Primer 2HAU1047_R: TGAGAAGCAGCAATCCAGTA
Product Length293
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:970588..970969 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:917084..917468 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:61526025..61526408 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:128535230..128535600 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:63025486..63025875 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold26.1supercontigscaffold26.1:2455973..2456343 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1231.1supercontigscaffold1231.1:409172..409553 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold67971supercontigscaffold67971:176..557 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:923566..923947 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:1207943..1208324 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:965136..965517 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:995702..996083 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:996086..996467 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4443supercontigscaffold4443:266404..266788 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11959supercontigscaffold11959:289183..289554 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:904241..904625 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:936557..936941 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:940968..941351 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:945195..945578 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:927857..928240 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:941943..942324 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:866016..866399 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:96308453..96308829 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:879158..879542 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:897598..898317 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:896989..897373 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:739704..740081 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:726628..727123 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:857466..857844 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:112797742..112798124 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>HAU1047 ID=HAU1047; Name=HAU1047; organism=Gossypium spp.; type=genetic_marker; length=293bp
CACAAACAAATCCAATTCCACCACCGTTGCCGGCGGTTCTTTTCTCGGGT
TGAAGCAACACCACCACCACCACCGAGACATGTTTCAGTTCCCTGTTAGT
CTTGCTGGGTCGAGAGATAACGACCGCCGTGGAACTTCAGCTTCTTCTTC
GCCGTCTGATGATACCAAGATTCCCGTCGATGAGGTTGATTTTTTCTCCG
ATAAGAAAGTTAGGGTCGTTGATGATGTCAAAAAGGAGAGTATAGAAACT
CCGGCGTCTGATTTGGATGTAAATACTGGATTGCTGCTTCTCA